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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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80 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD11
ENSSSCG00000007715
ENSG00000106077
Abhydrolase domain containing 11
Low tissue specificity
Detected in all
ACD
ENSSSCG00000029590
ENSG00000102977
ACD, shelterin complex subunit and telomerase recruitment factor
Low tissue specificity
Detected in all
BAZ1B
ENSSSCG00000027342
ENSG00000009954
Bromodomain adjacent to zinc finger domain 1B
Low tissue specificity
Detected in all
BCL7B
ENSSSCG00000007708
ENSG00000106635
BCL tumor suppressor 7B
Low tissue specificity
Detected in all
BUB1B
ENSSSCG00000004782
ENSG00000156970
BUB1 mitotic checkpoint serine/threonine kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
29.6
testis:
17.7
BUD23
ENSSSCG00000007713
ENSG00000071462
BUD23, rRNA methyltransferase and ribosome maturation factor
Tissue enhanced
Detected in all
lens:
71.2
CLDN4
ENSSSCG00000007718
ENSG00000189143
Claudin-4
Tissue enhanced
Detected in many
upper respiratory system:
62.5
CPLX1
ENSSSCG00000037527
ENSG00000168993
Complexin 1
Tissue enhanced
Detected in some
brain:
72.4
kidney:
15.6
retina:
24.1
CTBP1
ENSSSCG00000031302
ENSG00000159692
C-terminal binding protein 1
Low tissue specificity
Detected in all
CTNND2
ENSSSCG00000016780
ENSG00000169862
Catenin delta 2
Tissue enhanced
Detected in many
brain:
57.2
pineal gland:
25.0
DKC1
ENSSSCG00000012823
ENSG00000130826
H/ACA ribonucleoprotein complex subunit 4
Low tissue specificity
Detected in all
DNAJC30
ENSSSCG00000007712
ENSG00000176410
DnaJ heat shock protein family (Hsp40) member C30
Low tissue specificity
Detected in all
DYRK1A
ENSSSCG00000030480
ENSG00000157540
Dual specificity tyrosine phosphorylation regulated kinase 1A
Low tissue specificity
Detected in all
EFL1
ENSSSCG00000001792
ENSG00000140598
Elongation factor like GTPase 1
Low tissue specificity
Detected in all
EIF4H
ENSSSCG00000025966
ENSG00000106682
Eukaryotic translation initiation factor 4H isoform 1
Low tissue specificity
Detected in all
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
EMG1
ENSSSCG00000026812
ENSG00000126749
Ribosomal RNA small subunit methyltransferase NEP1
Low tissue specificity
Detected in all
FAN1
ENSSSCG00000004845
ENSG00000198690
FANCD2 and FANCI associated nuclease 1
Low tissue specificity
Detected in all
FGFRL1
ENSSSCG00000036512
ENSG00000127418
Fibroblast growth factor receptor like 1
Tissue enhanced
Detected in many
cartilage:
42.6
liver:
52.5
male glands:
35.3
FKBP6
ENSSSCG00000007702
ENSG00000077800
FK506 binding protein 6
Tissue enriched
Detected in single
testis:
66.6
FMR1
ENSSSCG00000012727
ENSG00000102081
Fragile X mental retardation 1
Low tissue specificity
Detected in all
FZD9
ENSSSCG00000023004
ENSG00000188763
Frizzled class receptor 9
Group enriched
Detected in many
cartilage:
34.9
choroid plexus:
18.2
testis:
9.9
GTF2I
ENSSSCG00000007721
ENSG00000263001
General transcription factor IIi
Low tissue specificity
Detected in all
GTF2IRD1
ENSSSCG00000007720
ENSG00000006704
GTF2I repeat domain containing 1
Low tissue specificity
Detected in all
HDAC4
ENSSSCG00000024777
ENSG00000068024
Histone deacetylase 4
Low tissue specificity
Detected in all
KANSL1
ENSSSCG00000017310
ENSG00000120071
KAT8 regulatory NSL complex subunit 1
Low tissue specificity
Detected in all
KLF13
ENSSSCG00000026006
ENSG00000169926
Krueppel-like factor 13
Low tissue specificity
Detected in all
LAT2
ENSSSCG00000027487
ENSG00000086730
Linker for activation of T-cells family member 2 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
41.5
LETM1
ENSSSCG00000008675
ENSG00000168924
LETM1 and EF-hand domain-containing protein 1, mitochondrial
Low tissue specificity
Detected in all
LIMK1
ENSSSCG00000030378
ENSG00000106683
LIM domain kinase 1
Tissue enhanced
Detected in all
cartilage:
57.1
MEF2C
ENSSSCG00000014149
ENSG00000081189
Myocyte-specific enhancer factor 2C
Tissue enhanced
Detected in many
brain:
69.6
skeletal muscle:
36.0
METTL27
ENSSSCG00000007717
ENSG00000165171
Methyltransferase like 27
Tissue enhanced
Detected in many
lens:
18.1
liver:
17.0
MLXIPL
ENSSSCG00000007710
ENSG00000009950
MLX interacting protein like
Tissue enhanced
Detected in many
adipose tissue:
74.7
liver:
76.6
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTRR
ENSSSCG00000017100
ENSG00000124275
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
Low tissue specificity
Detected in all
na
ENSSSCG00000007719
ENSG00000106665
Tissue enhanced
Detected in many
lens:
82.7
na
ENSSSCG00000007728
ENSG00000185274
Tissue enhanced
Detected in many
brain:
33.7
cornea:
40.9
vagus nerve:
25.4
na
ENSSSCG00000014910
ENSG00000182899
Tissue enhanced
Detected in many
liver:
11.1
mesothelial tissue:
10.5
na
ENSSSCG00000016869
ENSG00000166037
Tissue enhanced
Detected in many
cervix:
7.8
na
ENSSSCG00000017949
ENSG00000141499
Low tissue specificity
Detected in all
na
ENSSSCG00000033503
ENSG00000105372
Tissue enhanced
Detected in some
adrenal gland:
12.0
brain:
16.6
cervix:
16.5
retina:
9.9
na
ENSSSCG00000039160
ENSG00000258366
Low tissue specificity
Detected in all
na
ENSSSCG00000039635
ENSG00000145912
Low tissue specificity
Detected in all
NDN
ENSSSCG00000004834
ENSG00000182636
Necdin
Tissue enhanced
Detected in all
brain:
40.5
NOP10
ENSSSCG00000036960
ENSG00000182117
NOP10 ribonucleoprotein
Low tissue specificity
Detected in all
NSD2
ENSSSCG00000008682
ENSG00000109685
Nuclear receptor binding SET domain protein 2
Low tissue specificity
Detected in all
NSUN5
ENSSSCG00000007704
ENSG00000130305
NOP2/Sun RNA methyltransferase family member 5
Low tissue specificity
Detected in all
PARN
ENSSSCG00000007878
ENSG00000140694
Poly(A)-specific ribonuclease
Low tissue specificity
Detected in all
POLR1C
ENSSSCG00000028007
ENSG00000171453
RNA polymerase I subunit C
Low tissue specificity
Detected in all
POP1
ENSSSCG00000006078
ENSG00000104356
POP1 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
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