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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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80 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RAI1
ENSSSCG00000038164
ENSG00000108557
Retinoic acid induced 1
Low tissue specificity
Detected in all
RBM28
ENSSSCG00000031847
ENSG00000106344
RNA binding motif protein 28
Low tissue specificity
Detected in all
RCAN1
ENSSSCG00000012050
ENSG00000159200
Calcipressin-1
Tissue enhanced
Detected in all
cartilage:
90.9
RCC1L
ENSSSCG00000007723
ENSG00000274523
RCC1 like
Low tissue specificity
Detected in all
RFC2
ENSSSCG00000028504
ENSG00000049541
Replication factor C subunit 2
Low tissue specificity
Detected in all
RPL11
ENSSSCG00000024260
ENSG00000142676
60S ribosomal protein L11
Tissue enhanced
Detected in all
lens:
391.3
RPS17
ENSSSCG00000027358
ENSG00000182774
40S ribosomal protein S17
Tissue enhanced
Detected in all
male glands:
385.4
RPS28
ENSSSCG00000013597
ENSG00000233927
40S ribosomal protein S28
Low tissue specificity
Detected in all
RPS29
ENSSSCG00000038507
ENSG00000213741
Ribosomal protein S29
Tissue enhanced
Detected in all
lens:
291.8
SATB2
ENSSSCG00000021657
ENSG00000119042
SATB homeobox 2
Tissue enhanced
Detected in many
brain:
18.1
large intestine:
63.2
SBDS
ENSSSCG00000007732
ENSG00000126524
Ribosome maturation protein SBDS
Tissue enhanced
Detected in all
lens:
115.3
SEMA5A
ENSSSCG00000017095
ENSG00000112902
Semaphorin 5A
Tissue enhanced
Detected in many
lens:
89.0
SHANK3
ENSSSCG00000031925
ENSG00000251322
SH3 and multiple ankyrin repeat domains 3
Low tissue specificity
Detected in all
SIN3A
ENSSSCG00000001880
ENSG00000169375
SIN3 transcription regulator family member A
Low tissue specificity
Detected in all
SNRPN
ENSSSCG00000028124
ENSG00000128739
Small nuclear ribonucleoprotein-associated protein N
Tissue enhanced
Detected in many
brain:
75.1
lens:
52.1
SOX5
ENSSSCG00000000567
ENSG00000134532
SRY-box 5
Tissue enhanced
Detected in many
cartilage:
117.7
STX1A
ENSSSCG00000007772
ENSG00000106089
Syntaxin 1A
Tissue enriched
Detected in many
brain:
49.1
TBL2
ENSSSCG00000007709
ENSG00000106638
Transducin beta like 2
Low tissue specificity
Detected in all
TBX1
ENSSSCG00000037762
ENSG00000184058
T-box 1
Tissue enhanced
Detected in many
mouth:
31.0
skin:
39.2
TCOF1
ENSSSCG00000014450
ENSG00000070814
Treacle ribosome biogenesis factor 1
Tissue enhanced
Detected in all
testis:
38.9
TERT
ENSSSCG00000017118
ENSG00000164362
Telomerase reverse transcriptase
Tissue enhanced
Detected in many
small intestine:
13.6
stomach:
14.5
TINF2
ENSSSCG00000001994
ENSG00000092330
TERF1 interacting nuclear factor 2
Low tissue specificity
Detected in all
TMEM270
ENSSSCG00000007716
ENSG00000175877
Transmembrane protein 270
Tissue enriched
Detected in some
testis:
37.3
TRIM50
ENSSSCG00000007703
ENSG00000146755
E3 ubiquitin-protein ligase TRIM50
Tissue enhanced
Detected in some
brain:
4.0
kidney:
15.2
skin:
6.7
stomach:
8.7
TRIP13
ENSSSCG00000034522
ENSG00000071539
Pachytene checkpoint protein 2 homolog
Low tissue specificity
Detected in all
TRPM1
ENSSSCG00000004843
ENSG00000134160
Transient receptor potential cation channel subfamily M member 1
Tissue enriched
Detected in single
retina:
50.8
TSR2
ENSSSCG00000012334
ENSG00000158526
TSR2, ribosome maturation factor
Low tissue specificity
Detected in all
UBE3A
ENSSSCG00000004832
ENSG00000114062
Ubiquitin-protein ligase E3A isoform 1
Low tissue specificity
Detected in all
VPS37D
ENSSSCG00000033358
ENSG00000176428
VPS37D, ESCRT-I subunit
Low tissue specificity
Detected in all
WAC
ENSSSCG00000011013
ENSG00000095787
WW domain containing adaptor with coiled-coil
Low tissue specificity
Detected in all
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