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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ATF6
ENSSSCG00000006346
ENSG00000118217
Activating transcription factor 6
Low tissue specificity
Detected in all
ATG5
ENSSSCG00000004370
ENSG00000057663
Autophagy related 5
Low tissue specificity
Detected in all
ATL1
ENSSSCG00000005020
ENSG00000198513
Atlastin GTPase 1
Tissue enhanced
Detected in many
brain:
22.9
pineal gland:
10.9
ATL3
ENSSSCG00000013054
ENSG00000184743
Atlastin GTPase 3
Low tissue specificity
Detected in all
ATM
ENSSSCG00000025606
ENSG00000149311
Serine-protein kinase ATM
Low tissue specificity
Detected in all
ATN1
ENSSSCG00000025117
ENSG00000111676
Atrophin 1
Low tissue specificity
Detected in all
ATOH7
ENSSSCG00000021995
ENSG00000179774
Atonal bHLH transcription factor 7
Tissue enriched
Detected in some
liver:
15.5
ATP13A2
ENSSSCG00000031082
ENSG00000159363
ATPase 13A2
Low tissue specificity
Detected in all
ATP1A2
ENSSSCG00000006391
ENSG00000018625
Sodium/potassium-transporting ATPase subunit alpha-2
Tissue enhanced
Detected in all
brain:
103.3
choroid plexus:
63.2
skeletal muscle:
61.8
ATP6
ENSSSCG00000018081
ENSG00000198899
ATP synthase subunit a
Tissue enhanced
Detected in all
heart:
1899.7
ATP6V1A
ENSSSCG00000011916
ENSG00000114573
V-type proton ATPase catalytic subunit A
Low tissue specificity
Detected in all
ATP7A
ENSSSCG00000012437
ENSG00000165240
ATPase copper transporting alpha
Low tissue specificity
Detected in all
ATP8A2
ENSSSCG00000035421
ENSG00000132932
ATPase phospholipid transporting 8A2
Tissue enhanced
Detected in all
brain:
29.4
pineal gland:
18.8
retina:
56.1
ATXN1
ENSSSCG00000001065
ENSG00000124788
Ataxin 1
Low tissue specificity
Detected in all
ATXN10
ENSSSCG00000024864
ENSG00000130638
Ataxin 10
Tissue enhanced
Detected in all
lens:
59.5
ATXN2
ENSSSCG00000009834
ENSG00000204842
Ataxin 2
Low tissue specificity
Detected in all
B2M
ENSSSCG00000004687
ENSG00000166710
Beta-2-microglobulin
Low tissue specificity
Detected in all
B4GALNT1
ENSSSCG00000000433
ENSG00000135454
Beta-1,4-N-acetyl-galactosaminyltransferase 1
Tissue enhanced
Detected in many
ovary:
43.6
thyroid gland:
23.9
BBS2
ENSSSCG00000025417
ENSG00000125124
Bardet-Biedl syndrome 2
Low tissue specificity
Detected in all
BDNF
ENSSSCG00000013333
ENSG00000176697
Brain-derived neurotrophic factor
Tissue enhanced
Detected in many
brain:
18.1
pituitary gland:
7.9
BEAN1
ENSSSCG00000033191
ENSG00000166546
Brain expressed associated with NEDD4 1
Tissue enhanced
Detected in many
brain:
11.2
BEST1
ENSSSCG00000023090
ENSG00000167995
Bestrophin 1
Tissue enhanced
Detected in many
pineal gland:
23.3
retina:
30.1
testis:
29.2
vagus nerve:
23.4
BFSP1
ENSSSCG00000007084
ENSG00000125864
Beaded filament structural protein 1
Tissue enriched
Detected in some
lens:
933.0
BFSP2
ENSSSCG00000011636
ENSG00000170819
Beaded filament structural protein 2
Tissue enriched
Detected in single
lens:
638.0
BICD2
ENSSSCG00000027166
ENSG00000185963
BICD cargo adaptor 2
Low tissue specificity
Detected in all
BRAT1
ENSSSCG00000007563
ENSG00000106009
BRCA1 associated ATM activator 1
Low tissue specificity
Detected in all
BSCL2
ENSSSCG00000020823
ENSG00000168000
Seipin isoform 1
Tissue enhanced
Detected in all
testis:
129.5
C12orf65
ENSSSCG00000009774
ENSG00000130921
Chromosome 12 open reading frame 65
Low tissue specificity
Detected in all
C19orf12
ENSSSCG00000032153
ENSG00000131943
Chromosome 19 open reading frame 12
Low tissue specificity
Detected in all
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C2orf71
ENSSSCG00000024725
ENSG00000179270
Chromosome 2 open reading frame 71
Group enriched
Detected in some
choroid plexus:
47.5
retina:
35.6
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
C8orf37
ENSSSCG00000034398
ENSG00000156172
Chromosome 8 open reading frame 37
Low tissue specificity
Detected in all
C9orf72
ENSSSCG00000011010
ENSG00000147894
Chromosome 9 open reading frame 72
Low tissue specificity
Detected in all
CA4
ENSSSCG00000023186
ENSG00000167434
Carbonic anhydrase 4 precursor
Tissue enriched
Detected in many
gallbladder:
83.4
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CABP2
ENSSSCG00000020764
ENSG00000167791
Calcium binding protein 2
Group enriched
Detected in many
pineal gland:
14.4
retina:
26.1
CABP4
ENSSSCG00000012906
ENSG00000175544
Calcium binding protein 4
Group enriched
Detected in some
lymphoid tissue:
12.7
retina:
43.3
CACNA1A
ENSSSCG00000013754
ENSG00000141837
Calcium voltage-gated channel subunit alpha1 A
Tissue enhanced
Detected in many
brain:
52.1
pineal gland:
19.4
CACNA1F
ENSSSCG00000012298
ENSG00000102001
Calcium voltage-gated channel subunit alpha1 F
Tissue enriched
Detected in some
retina:
42.1
CACNA1G
ENSSSCG00000017562
ENSG00000006283
Calcium voltage-gated channel subunit alpha1 G
Tissue enhanced
Detected in many
brain:
25.6
CACNA2D4
ENSSSCG00000026537
ENSG00000151062
Calcium voltage-gated channel auxiliary subunit alpha2delta 4
Group enriched
Detected in some
pineal gland:
15.2
retina:
57.8
CACNB4
ENSSSCG00000029073
ENSG00000182389
Voltage-dependent L-type calcium channel subunit beta-4
Tissue enriched
Detected in many
brain:
64.8
CAD
ENSSSCG00000028978
ENSG00000084774
Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Low tissue specificity
Detected in all
CAMTA1
ENSSSCG00000036772
ENSG00000171735
Calmodulin binding transcription activator 1
Tissue enhanced
Detected in many
brain:
25.4
pineal gland:
13.6
CAPN1
ENSSSCG00000012999
ENSG00000014216
Calpain-1 catalytic subunit
Low tissue specificity
Detected in all
CAPN5
ENSSSCG00000014875
ENSG00000149260
Calpain 5
Tissue enhanced
Detected in all
large intestine:
39.9
stomach:
89.9
CASR
ENSSSCG00000011878
ENSG00000036828
Extracellular calcium-sensing receptor
Tissue enhanced
Detected in all
kidney:
24.5
pituitary gland:
23.8
CCDC50
ENSSSCG00000036423
ENSG00000152492
Coiled-coil domain containing 50
Low tissue specificity
Detected in all
CCDC88A
ENSSSCG00000008406
ENSG00000115355
Coiled-coil domain containing 88A
Tissue enhanced
Detected in many
brain:
42.8
testis:
42.0
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