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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TTF1
ENSSSCG00000005725
ENSG00000125482
Transcription termination factor 1
Low tissue specificity
Detected in all
TTLL5
ENSSSCG00000025984
ENSG00000119685
Tubulin tyrosine ligase like 5
Tissue enhanced
Detected in all
pineal gland:
59.1
retina:
71.7
TTR
ENSSSCG00000023686
ENSG00000118271
Transthyretin
Tissue enriched
Detected in some
choroid plexus:
1387.5
TUBA4A
ENSSSCG00000016216
ENSG00000127824
Tubulin alpha 4a
Tissue enhanced
Detected in many
brain:
63.2
skeletal muscle:
71.1
TUBB3
ENSSSCG00000002639
ENSG00000258947
Tubulin beta 3 class III
Tissue enriched
Detected in some
brain:
69.0
TULP1
ENSSSCG00000035972
ENSG00000112041
Tubby like protein 1
Group enriched
Detected in some
pineal gland:
52.1
retina:
107.3
TWNK
ENSSSCG00000030428
ENSG00000107815
Twinkle mtDNA helicase
Low tissue specificity
Detected in all
UBA1
ENSSSCG00000012270
ENSG00000130985
Ubiquitin like modifier activating enzyme 1
Low tissue specificity
Detected in all
UBA5
ENSSSCG00000011631
ENSG00000081307
Ubiquitin like modifier activating enzyme 5
Low tissue specificity
Detected in all
UBIAD1
ENSSSCG00000037325
ENSG00000120942
UbiA prenyltransferase domain containing 1
Low tissue specificity
Detected in all
UBQLN2
ENSSSCG00000035264
ENSG00000188021
Ubiquilin 2
Low tissue specificity
Detected in all
UCHL1
ENSSSCG00000022945
ENSG00000154277
Ubiquitin carboxyl-terminal hydrolase isozyme L1
Tissue enhanced
Detected in many
brain:
100.1
lens:
44.2
pineal gland:
29.0
pituitary gland:
33.0
UNC45B
ENSSSCG00000017717
ENSG00000141161
Protein unc-45 homolog B
Tissue enhanced
Detected in all
heart:
26.3
skeletal muscle:
52.2
USH1C
ENSSSCG00000013377
ENSG00000006611
USH1 protein network component harmonin
Group enriched
Detected in some
gallbladder:
16.1
kidney:
16.8
large intestine:
36.4
small intestine:
28.2
USH1G
ENSSSCG00000017223
ENSG00000182040
USH1 protein network component sans
Group enriched
Detected in some
brain:
4.3
lens:
1.3
ovary:
2.6
retina:
5.3
USH2A
ENSSSCG00000038066
ENSG00000042781
Usherin
Tissue enriched
Detected in some
retina:
61.5
VAMP1
ENSSSCG00000000703
ENSG00000139190
Vesicle associated membrane protein 1
Tissue enriched
Detected in many
brain:
145.7
VAPB
ENSSSCG00000007514
ENSG00000124164
Vesicle-associated membrane protein-associated protein B
Low tissue specificity
Detected in all
VCAN
ENSSSCG00000014136
ENSG00000038427
Versican core protein precursor
Tissue enhanced
Detected in all
ovary:
100.4
VCP
ENSSSCG00000005300
ENSG00000165280
Transitional endoplasmic reticulum ATPase
Low tissue specificity
Detected in all
VIM
ENSSSCG00000011033
ENSG00000026025
Vimentin
Tissue enhanced
Detected in all
lens:
729.5
VLDLR
ENSSSCG00000005229
ENSG00000147852
Very low-density lipoprotein receptor precursor
Tissue enhanced
Detected in all
ovary:
56.7
VPS13C
ENSSSCG00000036431
ENSG00000129003
Vacuolar protein sorting 13 homolog C
Low tissue specificity
Detected in all
VPS13D
ENSSSCG00000003438
ENSG00000048707
Vacuolar protein sorting 13 homolog D
Low tissue specificity
Detected in all
VPS35
ENSSSCG00000026239
ENSG00000069329
VPS35, retromer complex component
Low tissue specificity
Detected in all
VPS37A
ENSSSCG00000006984
ENSG00000155975
VPS37A, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS53
ENSSSCG00000017812
ENSG00000141252
VPS53, GARP complex subunit
Low tissue specificity
Detected in all
VRK1
ENSSSCG00000002506
ENSG00000100749
Serine/threonine-protein kinase VRK1
Tissue enhanced
Detected in all
lymphoid tissue:
34.5
VSX1
ENSSSCG00000023887
ENSG00000100987
Visual system homeobox 1
Tissue enriched
Detected in single
retina:
24.8
VWA3B
ENSSSCG00000033394
ENSG00000168658
Von Willebrand factor A domain containing 3B
Tissue enhanced
Detected in many
liver:
26.6
testis:
46.7
WASHC5
ENSSSCG00000005969
ENSG00000164961
WASH complex subunit 5
Low tissue specificity
Detected in all
WBP2
ENSSSCG00000021672
ENSG00000132471
WW domain binding protein 2
Low tissue specificity
Detected in all
WDR36
ENSSSCG00000014199
ENSG00000134987
WD repeat domain 36
Low tissue specificity
Detected in all
WDR45
ENSSSCG00000012290
ENSG00000196998
WD repeat domain phosphoinositide-interacting protein 4
Low tissue specificity
Detected in all
WDR81
ENSSSCG00000040732
ENSG00000167716
WD repeat domain 81
Low tissue specificity
Detected in all
WFS1
ENSSSCG00000032452
ENSG00000109501
Wolframin ER transmembrane glycoprotein
Tissue enriched
Detected in all
brain:
93.7
WHRN
ENSSSCG00000005490
ENSG00000095397
Whirlin
Tissue enhanced
Detected in all
lymphoid tissue:
29.4
WWOX
ENSSSCG00000027415
ENSG00000186153
WW domain containing oxidoreductase
Low tissue specificity
Detected in all
XK
ENSSSCG00000031868
ENSG00000047597
X-linked Kx blood group
Low tissue specificity
Detected in many
XPR1
ENSSSCG00000015537
ENSG00000143324
Xenotropic and polytropic retrovirus receptor 1
Low tissue specificity
Detected in all
YARS
ENSSSCG00000030369
ENSG00000134684
Tyrosyl-tRNA synthetase
Low tissue specificity
Detected in all
YEATS2
ENSSSCG00000011776
ENSG00000163872
YEATS domain containing 2
Low tissue specificity
Detected in all
YME1L1
ENSSSCG00000011066
ENSG00000136758
YME1 like 1 ATPase
Low tissue specificity
Detected in all
ZEB1
ENSSSCG00000011025
ENSG00000148516
Zinc finger E-box binding homeobox 1
Low tissue specificity
Detected in all
ZFYVE26
ENSSSCG00000002298
ENSG00000072121
Zinc finger FYVE-type containing 26
Low tissue specificity
Detected in all
ZFYVE27
ENSSSCG00000010528
ENSG00000155256
Zinc finger FYVE-type containing 27
Low tissue specificity
Detected in all
ZNF408
ENSSSCG00000023097
ENSG00000175213
Zinc finger protein 408
Low tissue specificity
Detected in all
ZNF513
ENSSSCG00000038626
ENSG00000163795
Zinc finger protein 513
Low tissue specificity
Detected in all
ZNF644
ENSSSCG00000022534
ENSG00000122482
Zinc finger protein 644
Low tissue specificity
Detected in all
ZNHIT3
ENSSSCG00000023373
ENSG00000273611
Zinc finger HIT-type containing 3
Low tissue specificity
Detected in all
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