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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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145 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
POMT2
ENSSSCG00000002397
ENSG00000009830
Protein O-mannosyltransferase 2
Low tissue specificity
Detected in all
PTH
ENSSSCG00000013394
ENSG00000152266
Parathyroid hormone
Tissue enhanced
Detected in many
brain:
5.7
PYROXD1
ENSSSCG00000000583
ENSG00000121350
Pyridine nucleotide-disulphide oxidoreductase domain 1
Low tissue specificity
Detected in all
RXYLT1
ENSSSCG00000000462
ENSG00000118600
Ribitol xylosyltransferase 1
Tissue enhanced
Detected in all
testis:
41.0
SCN10A
ENSSSCG00000011260
ENSG00000185313
Sodium voltage-gated channel alpha subunit 10
Tissue enhanced
Detected in some
kidney:
3.4
retina:
8.2
testis:
3.5
SCN11A
ENSSSCG00000029419
ENSG00000168356
Sodium voltage-gated channel alpha subunit 11
Tissue enriched
Detected in some
testis:
17.3
SCN4A
ENSSSCG00000017282
ENSG00000007314
Sodium voltage-gated channel alpha subunit 4
Tissue enriched
Detected in some
skeletal muscle:
63.3
SERPINE1
ENSSSCG00000025698
ENSG00000106366
Plasminogen activator inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
397.7
SGCA
ENSSSCG00000017583
ENSG00000108823
Alpha-sarcoglycan precursor
Tissue enhanced
Detected in all
skeletal muscle:
50.7
SGCB
ENSSSCG00000008833
ENSG00000163069
Beta-sarcoglycan
Low tissue specificity
Detected in all
SGCG
ENSSSCG00000009281
ENSG00000102683
Sarcoglycan gamma
Tissue enhanced
Detected in many
cartilage:
26.2
heart:
33.0
skeletal muscle:
47.2
SGMS2
ENSSSCG00000009152
ENSG00000164023
Sphingomyelin synthase 2
Tissue enhanced
Detected in all
choroid plexus:
40.1
SLC34A1
ENSSSCG00000037535
ENSG00000131183
Sodium-dependent phosphate transport protein 2A
Tissue enriched
Detected in single
kidney:
193.9
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLCO2A1
ENSSSCG00000011641
ENSG00000174640
Solute carrier organic anion transporter family member 2A1
Low tissue specificity
Detected in many
SMCHD1
ENSSSCG00000029030
ENSG00000101596
Structural maintenance of chromosomes flexible hinge domain containing 1
Low tissue specificity
Detected in all
SOST
ENSSSCG00000039204
ENSG00000167941
Sclerostin
Tissue enhanced
Detected in some
aorta:
5.3
bone marrow:
6.7
male glands:
4.0
urinary bladder:
6.6
SQSTM1
ENSSSCG00000014016
ENSG00000161011
Sequestosome 1
Low tissue specificity
Detected in all
STAC3
ENSSSCG00000029471
ENSG00000185482
SH3 and cysteine rich domain 3
Tissue enriched
Detected in some
skeletal muscle:
115.0
SYNE2
ENSSSCG00000005110
ENSG00000054654
Spectrin repeat containing nuclear envelope protein 2
Low tissue specificity
Detected in many
TBXAS1
ENSSSCG00000016504
ENSG00000059377
Thromboxane-A synthase
Low tissue specificity
Detected in many
TCAP
ENSSSCG00000017500
ENSG00000173991
Telethonin
Tissue enhanced
Detected in some
heart:
177.0
male glands:
53.1
skeletal muscle:
200.9
TGFB1
ENSSSCG00000003017
ENSG00000105329
Transforming growth factor beta-1 precursor
Low tissue specificity
Detected in all
TGFB3
ENSSSCG00000002385
ENSG00000119699
Transforming growth factor beta-3 precursor
Tissue enhanced
Detected in many
cartilage:
37.8
penis:
51.2
TIA1
ENSSSCG00000023409
ENSG00000116001
TIA1 cytotoxic granule associated RNA binding protein
Low tissue specificity
Detected in all
TNFRSF11A
ENSSSCG00000004898
ENSG00000141655
TNF receptor superfamily member 11a
Low tissue specificity
Detected in many
TNFRSF11B
ENSSSCG00000027762
ENSG00000164761
TNF receptor superfamily member 11b
Tissue enhanced
Detected in many
cartilage:
27.5
dura mater:
43.7
TNFSF11
ENSSSCG00000009429
ENSG00000120659
TNF superfamily member 11
Low tissue specificity
Detected in all
TNNT1
ENSSSCG00000025353
ENSG00000105048
Troponin T, slow skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
407.0
TNPO3
ENSSSCG00000016572
ENSG00000064419
Transportin 3
Low tissue specificity
Detected in all
TOR1AIP1
ENSSSCG00000032621
ENSG00000143337
Torsin 1A interacting protein 1
Low tissue specificity
Detected in all
TP53
ENSSSCG00000017950
ENSG00000141510
Cellular tumor antigen p53
Low tissue specificity
Detected in all
TPM2
ENSSSCG00000005316
ENSG00000198467
Tropomyosin beta chain
Tissue enriched
Detected in many
skeletal muscle:
765.9
TPM3
ENSSSCG00000006556
ENSG00000143549
Tropomyosin alpha-3 chain
Tissue enriched
Detected in all
skeletal muscle:
273.0
TRAPPC11
ENSSSCG00000015777
ENSG00000168538
Trafficking protein particle complex 11
Low tissue specificity
Detected in all
TRIM32
ENSSSCG00000005501
ENSG00000119401
Tripartite motif containing 32
Tissue enhanced
Detected in all
brain:
30.2
TRIP4
ENSSSCG00000004552
ENSG00000103671
Thyroid hormone receptor interactor 4
Tissue enhanced
Detected in all
lens:
56.4
TRPA1
ENSSSCG00000006186
ENSG00000104321
Transient receptor potential cation channel subfamily A member 1
Tissue enhanced
Detected in many
large intestine:
18.2
urinary bladder:
25.5
TRPV4
ENSSSCG00000009929
ENSG00000111199
Transient receptor potential cation channel subfamily V member 4
Tissue enriched
Detected in many
cartilage:
99.6
VCP
ENSSSCG00000005300
ENSG00000165280
Transitional endoplasmic reticulum ATPase
Low tissue specificity
Detected in all
VDR
ENSSSCG00000020864
ENSG00000111424
Vitamin D3 receptor
Tissue enhanced
Detected in many
large intestine:
34.3
skin:
35.4
small intestine:
43.2
VEGFA
ENSSSCG00000001695
ENSG00000112715
Vascular endothelial growth factor A precursor
Tissue enhanced
Detected in all
thyroid gland:
94.9
WNT1
ENSSSCG00000000183
ENSG00000125084
Wnt family member 1
Tissue enriched
Detected in some
ovary:
27.0
ZC4H2
ENSSSCG00000027657
ENSG00000126970
Zinc finger C4H2 domain-containing protein
Low tissue specificity
Detected in all
ZNF687
ENSSSCG00000006627
ENSG00000143373
Zinc finger protein 687
Low tissue specificity
Detected in all
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