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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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145 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HSPG2
ENSSSCG00000003514
ENSG00000142798
Heparan sulfate proteoglycan 2
Low tissue specificity
Detected in many
ISPD
ENSSSCG00000015358
ENSG00000214960
Isoprenoid synthase domain containing
Tissue enhanced
Detected in all
choroid plexus:
28.9
ITGA7
ENSSSCG00000036237
ENSG00000135424
Integrin subunit alpha 7
Tissue enhanced
Detected in many
adipose tissue:
76.7
ITGA9
ENSSSCG00000011245
ENSG00000144668
Integrin subunit alpha 9
Tissue enhanced
Detected in many
liver:
66.6
lymphoid tissue:
63.5
KBTBD13
ENSSSCG00000035667
ENSG00000234438
Kelch repeat and BTB domain containing 13
Tissue enhanced
Detected in some
heart:
8.2
retina:
10.7
skeletal muscle:
6.6
KCNE3
ENSSSCG00000029323
ENSG00000175538
Potassium voltage-gated channel subfamily E member 3
Tissue enhanced
Detected in many
thyroid gland:
44.7
upper respiratory system:
39.4
KCNJ18
ENSSSCG00000034773
ENSG00000260458
Potassium voltage-gated channel subfamily J member 18
Group enriched
Detected in many
brain:
21.1
lens:
77.9
skeletal muscle:
30.3
KCNJ2
ENSSSCG00000039947
ENSG00000123700
Inward rectifier potassium channel 2
Tissue enhanced
Detected in many
dura mater:
39.5
heart:
56.6
skeletal muscle:
29.9
KLHL40
ENSSSCG00000011286
ENSG00000157119
Kelch like family member 40
Tissue enriched
Detected in some
skeletal muscle:
49.0
KLHL41
ENSSSCG00000033049
ENSG00000239474
Kelch like family member 41
Tissue enriched
Detected in many
skeletal muscle:
159.2
KY
ENSSSCG00000011646
ENSG00000174611
Kyphoscoliosis peptidase
Group enriched
Detected in some
male glands:
27.5
mouth:
14.8
skeletal muscle:
40.0
LAMA2
ENSSSCG00000033894
ENSG00000196569
Laminin subunit alpha 2
Tissue enhanced
Detected in many
heart:
52.7
synovial tissue:
48.0
LAMP2
ENSSSCG00000012604
ENSG00000005893
Lysosome-associated membrane glycoprotein 2 isoform 1 precursor
Low tissue specificity
Detected in all
LGR4
ENSSSCG00000013335
ENSG00000205213
Leucine rich repeat containing G protein-coupled receptor 4
Tissue enhanced
Detected in many
stomach:
54.0
LIMS2
ENSSSCG00000015862
ENSG00000072163
LIM zinc finger domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
121.2
LMNA
ENSSSCG00000006496
ENSG00000160789
Prelamin-A/C
Low tissue specificity
Detected in many
LMOD3
ENSSSCG00000011508
ENSG00000163380
Leiomodin 3
Tissue enriched
Detected in some
skeletal muscle:
118.3
LRP5
ENSSSCG00000012885
ENSG00000162337
LDL receptor related protein 5
Low tissue specificity
Detected in all
MAFB
ENSSSCG00000032251
ENSG00000204103
MAF bZIP transcription factor B
Tissue enhanced
Detected in many
lymphoid tissue:
125.0
synovial tissue:
119.6
MMP14
ENSSSCG00000002039
ENSG00000157227
Matrix metallopeptidase 14
Tissue enhanced
Detected in all
cervix:
107.7
ovary:
96.3
MMP2
ENSSSCG00000002829
ENSG00000087245
72 kDa type IV collagenase precursor
Tissue enhanced
Detected in all
cervix:
147.1
MTM1
ENSSSCG00000012742
ENSG00000171100
Myotubularin 1
Low tissue specificity
Detected in all
MYF6
ENSSSCG00000026533
ENSG00000111046
Myogenic factor 6
Tissue enriched
Detected in some
skeletal muscle:
64.5
MYH2
ENSSSCG00000029441
ENSG00000125414
Myosin-2
Tissue enriched
Detected in some
skeletal muscle:
505.3
MYOT
ENSSSCG00000014324
ENSG00000120729
Myotilin
Tissue enriched
Detected in some
skeletal muscle:
267.8
MYPN
ENSSSCG00000029311
ENSG00000138347
Myopalladin
Group enriched
Detected in some
heart:
33.4
skeletal muscle:
112.0
na
ENSSSCG00000000959
ENSG00000133424
Low tissue specificity
Detected in all
na
ENSSSCG00000003554
ENSG00000162430
Low tissue specificity
Detected in all
na
ENSSSCG00000012746
ENSG00000160131
Low tissue specificity
Detected in all
na
ENSSSCG00000014792
ENSG00000167323
Stromal interaction molecule 1 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000015390
ENSG00000085563
ATP-binding cassette, sub-family B (MDR/TAP), member 1
Group enriched
Detected in many
adrenal gland:
120.4
ovary:
77.4
na
ENSSSCG00000017063
ENSG00000170624
Delta-sarcoglycan
Low tissue specificity
Detected in many
na
ENSSSCG00000022506
ENSG00000142156
Tissue enhanced
Detected in many
cartilage:
196.4
synovial tissue:
157.5
na
ENSSSCG00000032456
ENSG00000085563
Tissue enhanced
Detected in many
adrenal gland:
37.6
ovary:
22.4
na
ENSSSCG00000033272
ENSG00000105993
Low tissue specificity
Detected in all
na
ENSSSCG00000035073
ENSG00000085563
Tissue enhanced
Detected in many
brain:
19.8
liver:
11.1
testis:
10.4
na
ENSSSCG00000036976
ENSG00000122367
Group enriched
Detected in many
heart:
79.0
skeletal muscle:
151.8
NEB
ENSSSCG00000016397
ENSG00000183091
Nebulin
Tissue enriched
Detected in some
skeletal muscle:
369.6
NOS3
ENSSSCG00000016450
ENSG00000164867
Nitric oxide synthase, endothelial
Tissue enhanced
Detected in many
penis:
48.6
NOTCH2
ENSSSCG00000006709
ENSG00000134250
Notch 2
Low tissue specificity
Detected in all
NR3C1
ENSSSCG00000014401
ENSG00000113580
Glucocorticoid receptor
Low tissue specificity
Detected in all
ORAI1
ENSSSCG00000034510
ENSG00000276045
Calcium release-activated calcium channel protein 1
Low tissue specificity
Detected in all
PDLIM4
ENSSSCG00000014274
ENSG00000131435
PDZ and LIM domain protein 4
Low tissue specificity
Detected in all
PLEC
ENSSSCG00000039094
ENSG00000178209
Plectin
Low tissue specificity
Detected in all
PLS3
ENSSSCG00000012597
ENSG00000102024
Plastin 3
Low tissue specificity
Detected in all
POGLUT1
ENSSSCG00000032313
ENSG00000163389
Protein O-glucosyltransferase 1
Low tissue specificity
Detected in all
POMGNT1
ENSSSCG00000029145
ENSG00000085998
Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Low tissue specificity
Detected in all
POMGNT2
ENSSSCG00000011293
ENSG00000144647
Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
Tissue enhanced
Detected in all
ovary:
36.1
POMK
ENSSSCG00000031510
ENSG00000185900
Protein-O-mannose kinase
Low tissue specificity
Detected in all
POMT1
ENSSSCG00000005716
ENSG00000130714
Protein O-mannosyltransferase 1
Tissue enhanced
Detected in all
testis:
58.6
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