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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MASP2
ENSSSCG00000003410
ENSG00000009724
Mannan-binding lectin serine protease 2 precursor
Group enriched
Detected in all
liver:
45.4
lymphoid tissue:
33.7
MBL2
ENSSSCG00000010427
ENSG00000165471
Mannose-binding protein C precursor
Tissue enriched
Detected in some
liver:
133.6
MCM4
ENSSSCG00000006273
ENSG00000104738
Minichromosome maintenance complex component 4
Low tissue specificity
Detected in all
MIF
ENSSSCG00000010067
ENSG00000240972
Macrophage migration inhibitory factor
Low tissue specificity
Detected in all
MLPH
ENSSSCG00000032849
ENSG00000115648
Melanophilin
Tissue enhanced
Detected in many
esophagus:
60.9
male glands:
95.7
salivary gland:
81.4
stomach:
67.7
MPO
ENSSSCG00000017637
ENSG00000005381
Myeloperoxidase
Tissue enriched
Detected in some
bone marrow:
70.8
MRE11
ENSSSCG00000014955
ENSG00000020922
MRE11 homolog, double strand break repair nuclease
Low tissue specificity
Detected in all
MS4A1
ENSSSCG00000021812
ENSG00000156738
B-lymphocyte antigen CD20
Tissue enhanced
Detected in some
lung:
28.1
lymphoid tissue:
79.8
small intestine:
31.3
upper respiratory system:
52.6
MS4A2
ENSSSCG00000034506
ENSG00000149534
High affinity immunoglobulin epsilon receptor subunit beta
Tissue enhanced
Detected in many
adipose tissue:
28.2
MST1
ENSSSCG00000011386
ENSG00000173531
Macrophage stimulating 1
Group enriched
Detected in many
epididymis:
18.3
liver:
52.4
thyroid gland:
23.7
MVK
ENSSSCG00000009931
ENSG00000110921
Mevalonate kinase
Tissue enriched
Detected in many
liver:
84.3
MYD88
ENSSSCG00000011251
ENSG00000172936
Myeloid differentiation primary response protein MyD88
Low tissue specificity
Detected in many
MYO5A
ENSSSCG00000004620
ENSG00000197535
CAMP-regulated phosphoprotein 19
Tissue enhanced
Detected in all
brain:
69.8
na
ENSSSCG00000001456
ENSG00000196735
SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
163.6
na
ENSSSCG00000006350
ENSG00000072694
Low affinity immunoglobulin gamma Fc region receptor II-b precursor
Tissue enhanced
Detected in many
breast:
112.1
na
ENSSSCG00000007964
ENSG00000103313
Low tissue specificity
Detected in all
na
ENSSSCG00000008088
ENSG00000125538
Tissue enhanced
Detected in some
bone marrow:
1.2
testis:
1.2
na
ENSSSCG00000008485
ENSG00000004455
Low tissue specificity
Detected in all
na
ENSSSCG00000008974
ENSG00000198301
Low tissue specificity
Detected in all
na
ENSSSCG00000009138
ENSG00000205403,ENSG00000285330
Tissue enhanced
Detected in many
liver:
109.6
small intestine:
45.6
na
ENSSSCG00000010893
ENSG00000000971
Complement factor H precursor
Tissue enhanced
Detected in many
liver:
146.5
synovial tissue:
73.4
na
ENSSSCG00000011436
ENSG00000173366,ENSG00000239732
Toll-like receptor 9
Tissue enhanced
Detected in many
lymphoid tissue:
16.8
na
ENSSSCG00000012397
ENSG00000147168
Cytokine receptor common subunit gamma precursor
Tissue enhanced
Detected in many
lymphoid tissue:
34.4
na
ENSSSCG00000014198
ENSG00000145777
Tissue enhanced
Detected in many
liver:
11.9
mesothelial tissue:
10.6
na
ENSSSCG00000014280
ENSG00000113522,ENSG00000283782
Tissue enhanced
Detected in all
epididymis:
86.2
na
ENSSSCG00000014792
ENSG00000167323
Stromal interaction molecule 1 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000015390
ENSG00000085563
ATP-binding cassette, sub-family B (MDR/TAP), member 1
Group enriched
Detected in many
adrenal gland:
120.4
ovary:
77.4
na
ENSSSCG00000015488
ENSG00000117586
Tumor necrosis factor ligand superfamily member 4
Low tissue specificity
Detected in all
na
ENSSSCG00000015664
ENSG00000196352
Complement decay-accelerating factor precursor
Tissue enhanced
Detected in many
lymphoid tissue:
77.0
na
ENSSSCG00000022361
ENSG00000153064
Tissue enhanced
Detected in many
lymphoid tissue:
47.9
na
ENSSSCG00000024914
ENSG00000243649
Complement factor B precursor
Tissue enhanced
Detected in many
liver:
148.2
small intestine:
99.1
na
ENSSSCG00000025028
ENSG00000101966
E3 ubiquitin-protein ligase XIAP
Tissue enhanced
Detected in all
pineal gland:
66.2
na
ENSSSCG00000025593
ENSG00000204267,ENSG00000250264
Antigen peptide transporter 2
Low tissue specificity
Detected in many
na
ENSSSCG00000032456
ENSG00000085563
Tissue enhanced
Detected in many
adrenal gland:
37.6
ovary:
22.4
na
ENSSSCG00000034711
ENSG00000163961
Low tissue specificity
Detected in all
na
ENSSSCG00000035073
ENSG00000085563
Tissue enhanced
Detected in many
brain:
19.8
liver:
11.1
testis:
10.4
na
ENSSSCG00000036618
ENSG00000162747,ENSG00000203747
Low affinity immunoglobulin gamma Fc region receptor III precursor
Tissue enhanced
Detected in many
bone marrow:
25.1
lymphoid tissue:
29.6
na
ENSSSCG00000040958
ENSG00000213281
Low tissue specificity
Detected in all
NBN
ENSSSCG00000006127
ENSG00000104320
Nibrin
Low tissue specificity
Detected in all
NCF1
ENSSSCG00000007722
ENSG00000158517
Neutrophil cytosol factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
34.1
NCF2
ENSSSCG00000015559
ENSG00000116701
Neutrophil cytosol factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
46.1
synovial tissue:
22.1
NFKB1
ENSSSCG00000030957
ENSG00000109320
Nuclear factor NF-kappa-B p105 subunit
Low tissue specificity
Detected in all
NFKB2
ENSSSCG00000010580
ENSG00000077150
Nuclear factor kappa B subunit 2
Low tissue specificity
Detected in all
NFKBIA
ENSSSCG00000001952
ENSG00000100906
NF-kappa-B inhibitor alpha
Low tissue specificity
Detected in all
NHEJ1
ENSSSCG00000016205
ENSG00000187736
Non-homologous end joining factor 1
Low tissue specificity
Detected in all
NLRC4
ENSSSCG00000026213
ENSG00000091106
NLR family CARD domain containing 4
Low tissue specificity
Detected in some
NLRP12
ENSSSCG00000003251
ENSG00000142405
NLR family pyrin domain containing 12
Low tissue specificity
Detected in all
NLRP3
ENSSSCG00000013940
ENSG00000162711
NACHT, LRR and PYD domains-containing protein 3
Low tissue specificity
Detected in all
NOD1
ENSSSCG00000016678
ENSG00000106100
Nucleotide-binding oligomerization domain-containing protein 1
Tissue enhanced
Detected in many
lens:
42.6
NOD2
ENSSSCG00000038073
ENSG00000167207
Nucleotide-binding oligomerization domain-containing protein 2
Low tissue specificity
Detected in many
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