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Chromosome
1
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8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
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Dura mater
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Esophagus
Fallopian tube
Gallbladder
Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CD79A
ENSSSCG00000033684
ENSG00000105369
B-cell antigen receptor complex-associated protein alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
59.2
CD79B
ENSSSCG00000017283
ENSG00000007312
B-cell antigen receptor complex-associated protein beta chain precursor
Tissue enhanced
Detected in some
lymphoid tissue:
49.6
pituitary gland:
14.0
upper respiratory system:
33.2
CD81
ENSSSCG00000039243
ENSG00000110651
CD81 antigen
Low tissue specificity
Detected in all
CD8A
ENSSSCG00000008217
ENSG00000153563
T-cell surface glycoprotein CD8 alpha chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
80.2
CDCA7
ENSSSCG00000015961
ENSG00000144354
Cell division cycle associated 7
Tissue enhanced
Detected in all
lymphoid tissue:
34.3
CEBPE
ENSSSCG00000002033
ENSG00000092067
CCAAT/enhancer binding protein epsilon
Tissue enhanced
Detected in some
adipose tissue:
4.7
bone marrow:
21.7
dura mater:
7.9
CFD
ENSSSCG00000013418
ENSG00000197766
Complement factor D
Tissue enhanced
Detected in many
gallbladder:
125.8
small intestine:
98.3
stomach:
122.6
CFP
ENSSSCG00000012278
ENSG00000126759
Complement factor properdin
Tissue enhanced
Detected in many
lymphoid tissue:
22.0
small intestine:
36.0
stomach:
48.2
CIITA
ENSSSCG00000007901
ENSG00000179583
MHC class II transactivator
Tissue enhanced
Detected in all
lymphoid tissue:
56.8
CLEC7A
ENSSSCG00000000648
ENSG00000172243
C-type lectin domain family 7 member A
Tissue enhanced
Detected in many
lung:
9.6
COL6A5
ENSSSCG00000011186
ENSG00000172752
Collagen type VI alpha 5 chain
Tissue enhanced
Detected in many
gallbladder:
17.5
large intestine:
23.0
small intestine:
15.1
stomach:
30.0
CORO1A
ENSSSCG00000038055
ENSG00000102879
Coronin 1A
Tissue enhanced
Detected in many
lymphoid tissue:
109.8
upper respiratory system:
54.6
CPN1
ENSSSCG00000010545
ENSG00000120054
Carboxypeptidase N subunit 1
Tissue enhanced
Detected in all
cartilage:
64.6
liver:
42.0
CR2
ENSSSCG00000028674
ENSG00000117322
Complement C3d receptor 2
Group enriched
Detected in some
lymphoid tissue:
90.2
small intestine:
27.8
synovial tissue:
93.4
upper respiratory system:
29.5
CRP
ENSSSCG00000006403
ENSG00000132693
C-reactive protein precursor
Tissue enhanced
Detected in all
liver:
48.4
CTLA4
ENSSSCG00000016122
ENSG00000163599
Cytotoxic T-lymphocyte protein 4 precursor
Tissue enhanced
Detected in some
large intestine:
8.5
lymphoid tissue:
20.8
stomach:
6.7
CTPS1
ENSSSCG00000003973
ENSG00000171793
CTP synthase 1
Tissue enhanced
Detected in all
lymphoid tissue:
27.8
CXCL10
ENSSSCG00000032474
ENSG00000169245
C-X-C motif chemokine 10 precursor
Low tissue specificity
Detected in all
CXCL11
ENSSSCG00000008978
ENSG00000169248
C-X-C motif chemokine 11 precursor
Tissue enhanced
Detected in some
kidney:
12.1
large intestine:
22.7
testis:
8.4
CXCL9
ENSSSCG00000032777
ENSG00000138755
C-X-C motif chemokine 9 precursor
Tissue enhanced
Detected in many
large intestine:
26.7
liver:
29.3
lymphoid tissue:
41.0
CXCR4
ENSSSCG00000039416
ENSG00000121966
C-X-C chemokine receptor type 4
Tissue enhanced
Detected in all
lymphoid tissue:
33.9
ovary:
25.7
CYBA
ENSSSCG00000031493
ENSG00000051523
Cytochrome b-245 light chain
Low tissue specificity
Detected in all
DCLRE1C
ENSSSCG00000011049
ENSG00000152457
Protein artemis
Low tissue specificity
Detected in all
DGKE
ENSSSCG00000017615
ENSG00000153933
Diacylglycerol kinase epsilon
Low tissue specificity
Detected in all
DNMT3B
ENSSSCG00000007252
ENSG00000088305
DNA methyltransferase 3 beta
Low tissue specificity
Detected in many
DOCK2
ENSSSCG00000017008
ENSG00000134516
Dedicator of cytokinesis 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
stomach:
28.8
DOCK8
ENSSSCG00000005240
ENSG00000107099
Dedicator of cytokinesis 8
Tissue enhanced
Detected in many
lymphoid tissue:
48.5
ELANE
ENSSSCG00000029130
ENSG00000197561
Elastase, neutrophil expressed
Tissue enriched
Detected in many
bone marrow:
70.9
EPG5
ENSSSCG00000021072
ENSG00000152223
Ectopic P-granules autophagy protein 5 homolog
Low tissue specificity
Detected in all
EPO
ENSSSCG00000007673
ENSG00000130427
Erythropoietin
Tissue enhanced
Detected in some
testis:
5.3
EPX
ENSSSCG00000017630
ENSG00000121053
Eosinophil peroxidase
Group enriched
Detected in some
bone marrow:
70.8
dura mater:
18.8
FAS
ENSSSCG00000010448
ENSG00000026103
Tumor necrosis factor receptor superfamily member 6 precursor
Low tissue specificity
Detected in all
FASLG
ENSSSCG00000022226
ENSG00000117560
Tumor necrosis factor ligand superfamily member 6
Tissue enhanced
Detected in all
lymphoid tissue:
16.0
stomach:
16.2
FERMT3
ENSSSCG00000013041
ENSG00000149781
Fermitin family member 3
Tissue enhanced
Detected in all
lymphoid tissue:
54.0
FOXJ1
ENSSSCG00000017187
ENSG00000129654
Forkhead box J1
Tissue enhanced
Detected in some
fallopian tube:
107.2
upper respiratory system:
81.5
FOXN1
ENSSSCG00000017762
ENSG00000109101
Forkhead box N1
Group enriched
Detected in many
cornea:
11.5
lymphoid tissue:
11.5
mouth:
17.0
skin:
34.8
FOXP3
ENSSSCG00000012300
ENSG00000049768
Forkhead box protein P3
Tissue enriched
Detected in many
lymphoid tissue:
23.0
G6PC3
ENSSSCG00000017365
ENSG00000141349
Glucose-6-phosphatase catalytic subunit 3
Low tissue specificity
Detected in all
G6PD
ENSSSCG00000025108
ENSG00000160211
Glucose-6-phosphate dehydrogenase
Low tissue specificity
Detected in all
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GFI1
ENSSSCG00000006902
ENSG00000162676
Growth factor independent 1 transcriptional repressor
Tissue enhanced
Detected in many
lymphoid tissue:
39.4
small intestine:
14.5
stomach:
23.7
GP91-PHOX
ENSSSCG00000012229
ENSG00000165168
Cytochrome b-245 heavy chain precursor
Tissue enhanced
Detected in many
lung:
31.0
lymphoid tissue:
49.0
synovial tissue:
37.3
HAX1
ENSSSCG00000006552
ENSG00000143575
HCLS1 associated protein X-1
Low tissue specificity
Detected in all
HELLS
ENSSSCG00000010486
ENSG00000119969
Helicase, lymphoid specific
Low tissue specificity
Detected in all
ICAM1
ENSSSCG00000013655
ENSG00000090339
Intercellular adhesion molecule 1 precursor
Tissue enhanced
Detected in many
lung:
45.5
ICOS
ENSSSCG00000025042
ENSG00000163600
Tissue enhanced
Detected in some
large intestine:
7.4
lymphoid tissue:
24.6
stomach:
7.7
upper respiratory system:
7.3
IFIH1
ENSSSCG00000015897
ENSG00000115267
Interferon-induced helicase C domain-containing protein 1
Low tissue specificity
Detected in all
IFNG
ENSSSCG00000032963
ENSG00000111537
Interferon gamma
Low tissue specificity
Detected in many
IFNGR1
ENSSSCG00000004156
ENSG00000027697
Interferon gamma receptor 1 precursor
Low tissue specificity
Detected in all
IFNGR2
ENSSSCG00000034378
ENSG00000159128
Interferon gamma receptor 2 precursor
Low tissue specificity
Detected in all
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