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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACE
ENSSSCG00000017296
ENSG00000159640
Angiotensin-converting enzyme isoform 1 precursor
Tissue enhanced
Detected in many
testis:
102.1
ACTB
ENSSSCG00000007585
ENSG00000075624
Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed
Low tissue specificity
Detected in all
ADA
ENSSSCG00000021255
ENSG00000196839
Adenosine deaminase
Tissue enhanced
Detected in many
mouth:
124.3
small intestine:
43.7
stomach:
31.6
ADAM33
ENSSSCG00000007145
ENSG00000149451
ADAM metallopeptidase domain 33
Tissue enhanced
Detected in many
cervix:
43.8
mesothelial tissue:
42.3
ADAR
ENSSSCG00000006543
ENSG00000160710
Adenosine deaminase, RNA specific
Low tissue specificity
Detected in all
ADRB2
ENSSSCG00000038598
ENSG00000169252
Beta-2 adrenergic receptor
Low tissue specificity
Detected in many
AICDA
ENSSSCG00000000667
ENSG00000111732
Activation induced cytidine deaminase
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
upper respiratory system:
18.7
AIRE
ENSSSCG00000025294
ENSG00000160224
Autoimmune regulator
Tissue enhanced
Detected in some
brain:
8.2
kidney:
7.0
lymphoid tissue:
7.3
pituitary gland:
6.2
AQP4
ENSSSCG00000035965
ENSG00000171885
Aquaporin-4
Group enriched
Detected in some
brain:
138.1
pineal gland:
88.9
ATG16L1
ENSSSCG00000016300
ENSG00000085978
Autophagy-related protein 16-1 isoform 1
Low tissue specificity
Detected in all
ATM
ENSSSCG00000025606
ENSG00000149311
Serine-protein kinase ATM
Low tissue specificity
Detected in all
BCL10
ENSSSCG00000025691
ENSG00000142867
B-cell lymphoma/leukemia 10
Low tissue specificity
Detected in all
BLM
ENSSSCG00000001816
ENSG00000197299
Bloom syndrome protein
Tissue enhanced
Detected in all
epididymis:
26.5
BLNK
ENSSSCG00000010504
ENSG00000095585
B cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
38.4
small intestine:
27.2
BTK
ENSSSCG00000026742
ENSG00000010671
Tyrosine-protein kinase BTK
Tissue enhanced
Detected in many
lymphoid tissue:
33.5
upper respiratory system:
17.9
C1QA
ENSSSCG00000003524
ENSG00000173372
Complement C1q subcomponent subunit A precursor
Tissue enhanced
Detected in all
lymphoid tissue:
142.8
synovial tissue:
77.9
C1QB
ENSSSCG00000033512
ENSG00000173369
Complement C1q subcomponent subunit B precursor
Tissue enhanced
Detected in many
lymphoid tissue:
125.8
synovial tissue:
91.1
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C1R
ENSSSCG00000000675
ENSG00000159403
Complement C1r
Tissue enhanced
Detected in many
liver:
178.7
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
C4A
ENSSSCG00000001427
ENSG00000224389,ENSG00000244731
Complement C4-A precursor
Tissue enhanced
Detected in many
adipose tissue:
79.1
liver:
104.7
C4BPB
ENSSSCG00000015661
ENSG00000123843
Complement component 4 binding protein beta
Group enriched
Detected in all
liver:
53.7
small intestine:
17.1
C5
ENSSSCG00000005512
ENSG00000106804
Complement C5a anaphylatoxin precursor
Group enriched
Detected in some
large intestine:
44.2
liver:
68.9
lung:
41.8
small intestine:
35.3
C6
ENSSSCG00000016861
ENSG00000039537
Complement component C6 precursor
Group enriched
Detected in some
large intestine:
34.7
liver:
124.3
C7
ENSSSCG00000016859
ENSG00000112936
Complement component C7 precursor
Tissue enhanced
Detected in many
gallbladder:
59.4
heart:
46.0
lymphoid tissue:
47.5
small intestine:
47.9
C8A
ENSSSCG00000003835
ENSG00000157131
Complement C8 alpha chain
Tissue enriched
Detected in some
liver:
106.5
C8B
ENSSSCG00000003834
ENSG00000021852
Complement component C8 beta chain precursor
Tissue enriched
Detected in many
liver:
121.4
C8G
ENSSSCG00000005840
ENSG00000176919
Complement component C8 gamma chain precursor
Tissue enriched
Detected in some
liver:
111.8
C9
ENSSSCG00000016856
ENSG00000113600
Complement component C9 precursor
Tissue enriched
Detected in some
liver:
150.1
CARD11
ENSSSCG00000034390
ENSG00000198286
Caspase recruitment domain family member 11
Tissue enhanced
Detected in many
heart:
26.3
lymphoid tissue:
33.3
stomach:
42.8
CARD9
ENSSSCG00000031715
ENSG00000187796
Caspase recruitment domain family member 9
Tissue enhanced
Detected in many
lymphoid tissue:
36.5
CASP10
ENSSSCG00000026940
ENSG00000003400
Caspase-10
Low tissue specificity
Detected in all
CASP8
ENSSSCG00000028157
ENSG00000064012
Caspase-8
Low tissue specificity
Detected in all
CCL26
ENSSSCG00000039874
ENSG00000006606
C-C motif chemokine 26 precursor
Tissue enhanced
Detected in many
cartilage:
27.6
CCL5
ENSSSCG00000017705
ENSG00000271503
C-C motif chemokine 5 precursor
Tissue enhanced
Detected in many
large intestine:
83.3
small intestine:
60.4
stomach:
49.5
CCR1
ENSSSCG00000011322
ENSG00000163823
C-C chemokine receptor type 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.0
CCR2
ENSSSCG00000024311
ENSG00000121807
C-C chemokine receptor type 2
Tissue enhanced
Detected in many
ovary:
15.6
CCR3
ENSSSCG00000024408
ENSG00000183625
C-C chemokine receptor type 3
Tissue enhanced
Detected in some
epididymis:
5.0
lymphoid tissue:
6.0
CCR5
ENSSSCG00000024344
ENSG00000160791
C-C chemokine receptor type 5
Low tissue specificity
Detected in many
CCR6
ENSSSCG00000024562
ENSG00000112486
C-C motif chemokine receptor 6
Tissue enhanced
Detected in some
lymphoid tissue:
33.3
stomach:
12.3
upper respiratory system:
8.9
CD14
ENSSSCG00000014369
ENSG00000170458
Monocyte differentiation antigen CD14 precursor
Tissue enhanced
Detected in all
liver:
74.2
synovial tissue:
43.7
CD19
ENSSSCG00000007807
ENSG00000177455
B-lymphocyte antigen CD19 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
46.0
CD247
ENSSSCG00000006309
ENSG00000198821
T-cell surface glycoprotein CD3 zeta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
72.3
testis:
28.8
CD3D
ENSSSCG00000015093
ENSG00000167286
T-cell surface glycoprotein CD3 delta chain
Tissue enriched
Detected in all
lymphoid tissue:
95.4
CD3E
ENSSSCG00000040140
ENSG00000198851
T-cell surface glycoprotein CD3 epsilon chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
71.1
CD3G
ENSSSCG00000015094
ENSG00000160654
T-cell surface glycoprotein CD3 gamma chain
Tissue enhanced
Detected in all
lymphoid tissue:
57.1
CD40
ENSSSCG00000035078
ENSG00000101017
Tumor necrosis factor receptor superfamily member 5
Tissue enhanced
Detected in all
lens:
32.7
lymphoid tissue:
21.3
CD40LG
ENSSSCG00000030172
ENSG00000102245
CD40 ligand
Tissue enhanced
Detected in many
lymphoid tissue:
20.6
small intestine:
6.8
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