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Keyword
Chromosome
1
2
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7
8
9
10
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DNA2
ENSSSCG00000010240
ENSG00000138346
DNA replication helicase/nuclease 2
Low tissue specificity
Detected in all
DNM2
ENSSSCG00000013630
ENSG00000079805
Dynamin 2
Tissue enhanced
Detected in all
male glands:
108.5
DNMT3A
ENSSSCG00000029413
ENSG00000119772
DNA (cytosine-5)-methyltransferase 3A
Low tissue specificity
Detected in all
DOCK6
ENSSSCG00000038604
ENSG00000130158
Dedicator of cytokinesis 6
Low tissue specificity
Detected in many
DOK7
ENSSSCG00000008702
ENSG00000175920
Docking protein 7
Tissue enhanced
Detected in many
brain:
16.1
heart:
24.7
skeletal muscle:
13.7
DONSON
ENSSSCG00000027089
ENSG00000159147
Downstream neighbor of SON
Low tissue specificity
Detected in all
DPF2
ENSSSCG00000012995
ENSG00000133884
Double PHD fingers 2
Low tissue specificity
Detected in all
DPH1
ENSSSCG00000017824
ENSG00000108963
Diphthamide biosynthesis 1
Low tissue specificity
Detected in all
DSG1
ENSSSCG00000020694
ENSG00000134760
Desmoglein-1 precursor
Group enriched
Detected in some
cornea:
61.4
mouth:
63.3
skin:
32.2
DSP
ENSSSCG00000001025
ENSG00000096696
Desmoplakin
Tissue enhanced
Detected in all
cornea:
119.8
mouth:
102.2
skin:
94.4
DSTYK
ENSSSCG00000015286
ENSG00000133059
Dual serine/threonine and tyrosine protein kinase
Low tissue specificity
Detected in all
DVL1
ENSSSCG00000003342
ENSG00000107404
Dishevelled segment polarity protein 1
Low tissue specificity
Detected in all
DVL3
ENSSSCG00000025374
ENSG00000161202
Dishevelled segment polarity protein 3
Low tissue specificity
Detected in all
DYM
ENSSSCG00000004508
ENSG00000141627
Dymeclin
Low tissue specificity
Detected in all
DYNC2LI1
ENSSSCG00000038383
ENSG00000138036
Dynein cytoplasmic 2 light intermediate chain 1
Low tissue specificity
Detected in all
DZIP1L
ENSSSCG00000027467
ENSG00000158163
DAZ interacting zinc finger protein 1 like
Tissue enhanced
Detected in many
choroid plexus:
47.9
EBF3
ENSSSCG00000010757
ENSG00000108001
Early B cell factor 3
Tissue enhanced
Detected in many
adipose tissue:
32.3
EBP
ENSSSCG00000032768
ENSG00000147155
3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase
Tissue enhanced
Detected in all
liver:
53.4
ovary:
47.3
ECEL1
ENSSSCG00000016285
ENSG00000171551
Endothelin converting enzyme like 1
Tissue enriched
Detected in some
brain:
32.7
EDA
ENSSSCG00000021647
ENSG00000158813
Ectodysplasin A
Low tissue specificity
Detected in many
EDAR
ENSSSCG00000008134
ENSG00000135960
Ectodysplasin A receptor
Low tissue specificity
Detected in all
EDARADD
ENSSSCG00000025986
ENSG00000186197
Ectodysplasin-A receptor-associated adapter protein
Low tissue specificity
Detected in many
EDN1
ENSSSCG00000035598
ENSG00000078401
Endothelin-1 preproprotein
Low tissue specificity
Detected in all
EDNRA
ENSSSCG00000009031
ENSG00000151617
Endothelin-1 receptor precursor
Tissue enhanced
Detected in many
heart:
41.0
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
EFEMP2
ENSSSCG00000012971
ENSG00000172638
EGF containing fibulin extracellular matrix protein 2
Low tissue specificity
Detected in all
EFNB1
ENSSSCG00000032728
ENSG00000090776
Ephrin B1
Low tissue specificity
Detected in all
EFTUD2
ENSSSCG00000017346
ENSG00000108883
Elongation factor Tu GTP binding domain containing 2
Tissue enhanced
Detected in all
cornea:
73.5
lens:
69.9
EHMT1
ENSSSCG00000038437
ENSG00000181090
Euchromatic histone lysine methyltransferase 1
Low tissue specificity
Detected in all
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
ELP4
ENSSSCG00000013321
ENSG00000109911
Elongator acetyltransferase complex subunit 4
Low tissue specificity
Detected in all
EMC1
ENSSSCG00000003489
ENSG00000127463
ER membrane protein complex subunit 1
Low tissue specificity
Detected in all
EMX2
ENSSSCG00000032558
ENSG00000170370
Empty spiracles homeobox 2
Tissue enhanced
Detected in many
epididymis:
46.6
male glands:
49.0
EOGT
ENSSSCG00000011504
ENSG00000163378
EGF domain-specific O-linked N-acetylglucosamine transferase precursor
Low tissue specificity
Detected in all
EOMES
ENSSSCG00000040057
ENSG00000163508
Eomesodermin
Group enriched
Detected in many
brain:
27.8
lymphoid tissue:
24.1
EP300
ENSSSCG00000000068
ENSG00000100393
E1A binding protein p300
Low tissue specificity
Detected in all
EPHB4
ENSSSCG00000007675
ENSG00000196411
EPH receptor B4
Low tissue specificity
Detected in many
ERAL1
ENSSSCG00000017776
ENSG00000132591
Era like 12S mitochondrial rRNA chaperone 1
Low tissue specificity
Detected in all
ERCC1
ENSSSCG00000036455
ENSG00000012061
DNA excision repair protein ERCC-1
Low tissue specificity
Detected in all
ERCC2
ENSSSCG00000039929
ENSG00000104884
ERCC excision repair 2, TFIIH core complex helicase subunit
Tissue enhanced
Detected in all
retina:
46.7
ERCC3
ENSSSCG00000015721
ENSG00000163161
ERCC excision repair 3, TFIIH core complex helicase subunit
Low tissue specificity
Detected in all
ERCC4
ENSSSCG00000007881
ENSG00000175595
ERCC excision repair 4, endonuclease catalytic subunit
Low tissue specificity
Detected in all
ERCC5
ENSSSCG00000032046
ENSG00000134899
ERCC excision repair 5, endonuclease
Low tissue specificity
Detected in all
ERCC6
ENSSSCG00000010391
ENSG00000225830
ERCC excision repair 6, chromatin remodeling factor
Low tissue specificity
Detected in all
ERCC8
ENSSSCG00000016934
ENSG00000049167
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Low tissue specificity
Detected in all
ERF
ENSSSCG00000032154
ENSG00000105722
ETS2 repressor factor
Low tissue specificity
Detected in all
ERGIC1
ENSSSCG00000016988
ENSG00000113719
Endoplasmic reticulum-golgi intermediate compartment 1
Tissue enhanced
Detected in all
male glands:
91.8
ERMARD
ENSSSCG00000004010
ENSG00000130023
ER membrane associated RNA degradation
Low tissue specificity
Detected in all
ESCO2
ENSSSCG00000009670
ENSG00000171320
Establishment of sister chromatid cohesion N-acetyltransferase 2
Group enriched
Detected in many
lymphoid tissue:
10.9
testis:
37.1
EVC
ENSSSCG00000032637
ENSG00000072840
EvC ciliary complex subunit 1
Tissue enhanced
Detected in all
kidney:
55.2
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