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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCDC8
ENSSSCG00000033830
ENSG00000169515
Coiled-coil domain containing 8
Low tissue specificity
Detected in all
CCND1
ENSSSCG00000037900
ENSG00000110092
Cyclin D1
Low tissue specificity
Detected in many
CCND2
ENSSSCG00000038694
ENSG00000118971
G1/S-specific cyclin-D2
Low tissue specificity
Detected in all
CCNQ
ENSSSCG00000012770
ENSG00000262919
Cyclin Q
Low tissue specificity
Detected in all
CD96
ENSSSCG00000023993
ENSG00000153283
T-cell surface protein tactile
Tissue enhanced
Detected in many
large intestine:
22.3
lymphoid tissue:
27.2
CDC45
ENSSSCG00000010122
ENSG00000093009
Cell division cycle 45
Tissue enhanced
Detected in many
cartilage:
31.2
CDC6
ENSSSCG00000017471
ENSG00000094804
Cell division cycle 6
Tissue enhanced
Detected in all
lymphoid tissue:
19.7
CDH3
ENSSSCG00000023162
ENSG00000062038
Cadherin 3
Tissue enhanced
Detected in many
choroid plexus:
29.6
kidney:
32.5
thyroid gland:
48.9
CDK5
ENSSSCG00000024070
ENSG00000164885
Cyclin-dependent-like kinase 5
Low tissue specificity
Detected in all
CDK6
ENSSSCG00000040183
ENSG00000105810
Cyclin dependent kinase 6
Tissue enhanced
Detected in all
lymphoid tissue:
52.9
CDON
ENSSSCG00000022504
ENSG00000064309
Cell adhesion associated, oncogene regulated
Tissue enhanced
Detected in many
cartilage:
107.4
mesothelial tissue:
70.4
CDSN
ENSSSCG00000030903
ENSG00000204539
Corneodesmosin
Tissue enriched
Detected in some
skin:
49.1
CDT1
ENSSSCG00000002651
ENSG00000167513
Chromatin licensing and DNA replication factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
CENPE
ENSSSCG00000023296
ENSG00000138778
Centromere protein E
Tissue enhanced
Detected in many
large intestine:
15.5
lymphoid tissue:
29.2
CENPF
ENSSSCG00000015581
ENSG00000117724
Centromere protein F
Tissue enhanced
Detected in many
large intestine:
19.1
lymphoid tissue:
41.0
testis:
22.4
CEP104
ENSSSCG00000003362
ENSG00000116198
Centrosomal protein 104
Low tissue specificity
Detected in all
CEP120
ENSSSCG00000014239
ENSG00000168944
Centrosomal protein 120
Low tissue specificity
Detected in all
CEP135
ENSSSCG00000022283
ENSG00000174799
Centrosomal protein 135
Low tissue specificity
Detected in all
CEP152
ENSSSCG00000004657
ENSG00000103995
Centrosomal protein 152
Tissue enhanced
Detected in many
vagus nerve:
40.6
CEP164
ENSSSCG00000015080
ENSG00000110274
Centrosomal protein 164
Tissue enriched
Detected in all
testis:
56.2
CEP290
ENSSSCG00000000926
ENSG00000198707
Centrosomal protein 290
Low tissue specificity
Detected in all
CEP41
ENSSSCG00000016556
ENSG00000106477
Centrosomal protein 41
Low tissue specificity
Detected in all
CEP55
ENSSSCG00000010477
ENSG00000138180
Centrosomal protein 55
Tissue enhanced
Detected in many
testis:
34.9
CEP63
ENSSSCG00000011645
ENSG00000182923
Centrosomal protein 63
Tissue enhanced
Detected in all
testis:
80.9
CEP83
ENSSSCG00000024563
ENSG00000173588
Centrosomal protein 83
Low tissue specificity
Detected in all
CERS3
ENSSSCG00000004819
ENSG00000154227
Ceramide synthase 3
Group enriched
Detected in some
mouth:
19.9
skin:
13.2
testis:
35.6
CFTR
ENSSSCG00000016626
ENSG00000001626
Cystic fibrosis transmembrane conductance regulator
Tissue enhanced
Detected in many
large intestine:
16.2
small intestine:
43.3
CHD4
ENSSSCG00000000697
ENSG00000111642
Chromodomain helicase DNA binding protein 4
Low tissue specificity
Detected in all
CHD7
ENSSSCG00000006231
ENSG00000171316
Chromodomain helicase DNA binding protein 7
Low tissue specificity
Detected in all
CHRNA1
ENSSSCG00000015969
ENSG00000138435
Cholinergic receptor nicotinic alpha 1 subunit
Low tissue specificity
Detected in all
CHRND
ENSSSCG00000016287
ENSG00000135902
Cholinergic receptor nicotinic delta subunit
Group enriched
Detected in some
brain:
2.9
male glands:
4.1
mouth:
6.1
skeletal muscle:
5.1
CHRNG
ENSSSCG00000016288
ENSG00000196811
Cholinergic receptor nicotinic gamma subunit
Tissue enhanced
Detected in many
mouth:
8.9
CHST14
ENSSSCG00000004771
ENSG00000169105
Carbohydrate sulfotransferase 14
Low tissue specificity
Detected in all
CHST3
ENSSSCG00000023662
ENSG00000122863
Carbohydrate sulfotransferase 3
Tissue enhanced
Detected in many
cartilage:
38.4
CHST8
ENSSSCG00000035222
ENSG00000124302
Carbohydrate sulfotransferase 8
Tissue enhanced
Detected in some
brain:
11.1
lymphoid tissue:
12.5
pituitary gland:
16.7
testis:
10.1
CHSY1
ENSSSCG00000004825
ENSG00000131873
Chondroitin sulfate synthase 1
Low tissue specificity
Detected in all
CHUK
ENSSSCG00000010548
ENSG00000213341
Inhibitor of nuclear factor kappa-B kinase subunit alpha
Low tissue specificity
Detected in all
CKAP2L
ENSSSCG00000008089
ENSG00000169607
Cytoskeleton associated protein 2 like
Tissue enhanced
Detected in many
large intestine:
16.8
lymphoid tissue:
16.2
small intestine:
19.1
stomach:
37.0
CLCF1
ENSSSCG00000012915
ENSG00000175505
Cardiotrophin like cytokine factor 1
Low tissue specificity
Detected in all
CLCN7
ENSSSCG00000008024
ENSG00000103249
Chloride voltage-gated channel 7
Low tissue specificity
Detected in all
CLDN1
ENSSSCG00000040904
ENSG00000163347
Claudin-1
Low tissue specificity
Detected in all
CLMP
ENSSSCG00000022961
ENSG00000166250
CXADR like membrane protein
Tissue enhanced
Detected in all
cervix:
64.3
CLPP
ENSSSCG00000038079
ENSG00000125656
Caseinolytic mitochondrial matrix peptidase proteolytic subunit
Low tissue specificity
Detected in all
CNTNAP1
ENSSSCG00000017393
ENSG00000108797
Contactin associated protein 1
Tissue enhanced
Detected in many
brain:
35.3
pineal gland:
17.0
CNTNAP2
ENSSSCG00000037981
ENSG00000174469
Contactin associated protein like 2
Tissue enhanced
Detected in many
brain:
24.4
cervix:
19.4
pituitary gland:
25.1
thyroid gland:
18.3
COL10A1
ENSSSCG00000004436
ENSG00000123500
Collagen alpha-1(X) chain precursor
Group enriched
Detected in some
cartilage:
24.1
upper respiratory system:
90.6
COL11A1
ENSSSCG00000006857
ENSG00000060718
Collagen type XI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
170.9
COL11A2
ENSSSCG00000001473
ENSG00000204248
Collagen type XI alpha 2 chain
Tissue enriched
Detected in some
cartilage:
294.3
COL12A1
ENSSSCG00000004484
ENSG00000111799
Collagen type XII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
157.9
COL14A1
ENSSSCG00000005997
ENSG00000187955
Collagen type XIV alpha 1 chain
Low tissue specificity
Detected in all
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