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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ARID2
ENSSSCG00000030685
ENSG00000189079
AT-rich interaction domain 2
Low tissue specificity
Detected in all
ARMC9
ENSSSCG00000023994
ENSG00000135931
Armadillo repeat containing 9
Low tissue specificity
Detected in all
ARNT2
ENSSSCG00000040288
ENSG00000172379
Aryl hydrocarbon receptor nuclear translocator 2
Tissue enhanced
Detected in many
brain:
40.4
cornea:
43.5
epididymis:
27.7
ARSE
ENSSSCG00000022129
ENSG00000157399
Arylsulfatase E precursor
Tissue enhanced
Detected in many
cartilage:
24.1
ARX
ENSSSCG00000020801
ENSG00000004848
Aristaless related homeobox
Group enriched
Detected in some
brain:
19.5
ovary:
19.2
skeletal muscle:
16.1
ASPH
ENSSSCG00000025087
ENSG00000198363
Aspartate beta-hydroxylase
Tissue enhanced
Detected in all
male glands:
108.5
ASPM
ENSSSCG00000010896
ENSG00000066279
Abnormal spindle microtubule assembly
Tissue enhanced
Detected in many
lymphoid tissue:
29.3
ASXL1
ENSSSCG00000007248
ENSG00000171456
Additional sex combs like 1, transcriptional regulator
Low tissue specificity
Detected in all
ASXL3
ENSSSCG00000003736
ENSG00000141431
Additional sex combs like 3, transcriptional regulator
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.4
testis:
16.1
ATP2A2
ENSSSCG00000034386
ENSG00000174437
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
Tissue enhanced
Detected in all
heart:
125.0
skeletal muscle:
197.8
ATP2C1
ENSSSCG00000011183
ENSG00000017260
ATPase secretory pathway Ca2+ transporting 1
Low tissue specificity
Detected in all
ATP6V0A2
ENSSSCG00000009766
ENSG00000185344
ATPase H+ transporting V0 subunit a2
Low tissue specificity
Detected in all
ATP6V1B2
ENSSSCG00000028694
ENSG00000147416
ATPase H+ transporting V1 subunit B2
Tissue enhanced
Detected in all
brain:
48.8
pineal gland:
45.5
ATP6V1E1
ENSSSCG00000000767
ENSG00000131100
ATPase H+ transporting V1 subunit E1
Tissue enhanced
Detected in all
lens:
85.9
ATR
ENSSSCG00000011679
ENSG00000175054
ATR serine/threonine kinase
Low tissue specificity
Detected in all
ATRX
ENSSSCG00000012434
ENSG00000085224
ATRX, chromatin remodeler
Low tissue specificity
Detected in all
AXIN1
ENSSSCG00000023204
ENSG00000103126
Axin 1
Low tissue specificity
Detected in all
B3GALNT2
ENSSSCG00000033692
ENSG00000162885
Beta-1,3-N-acetylgalactosaminyltransferase 2
Low tissue specificity
Detected in all
B3GALT6
ENSSSCG00000022151
ENSG00000176022
Beta-1,3-galactosyltransferase 6
Low tissue specificity
Detected in all
B3GLCT
ENSSSCG00000009335
ENSG00000187676
Beta 3-glucosyltransferase
Low tissue specificity
Detected in all
B4GALT7
ENSSSCG00000014035
ENSG00000027847
Beta-1,4-galactosyltransferase 7
Low tissue specificity
Detected in all
B4GAT1
ENSSSCG00000012940
ENSG00000174684
Beta-1,4-glucuronyltransferase 1
Tissue enhanced
Detected in many
brain:
41.1
B9D1
ENSSSCG00000039681
ENSG00000108641
B9 domain containing 1
Low tissue specificity
Detected in all
B9D2
ENSSSCG00000003013
ENSG00000123810
B9 domain containing 2
Low tissue specificity
Detected in all
BCAP31
ENSSSCG00000012772
ENSG00000185825
B cell receptor associated protein 31
Low tissue specificity
Detected in all
BGN
ENSSSCG00000012766
ENSG00000182492
Biglycan
Tissue enhanced
Detected in many
cartilage:
481.4
synovial tissue:
137.3
BHLHA9
ENSSSCG00000017802
ENSG00000205899
Basic helix-loop-helix family member a9
Group enriched
Detected in some
adipose tissue:
16.9
bone marrow:
5.3
BLM
ENSSSCG00000001816
ENSG00000197299
Bloom syndrome protein
Tissue enhanced
Detected in all
epididymis:
26.5
BMP1
ENSSSCG00000009620
ENSG00000168487
Bone morphogenetic protein 1
Tissue enhanced
Detected in many
cartilage:
47.6
ovary:
59.8
BMP2
ENSSSCG00000039442
ENSG00000125845
Bone morphogenetic protein 2 precursor
Tissue enriched
Detected in many
cartilage:
70.8
BMP4
ENSSSCG00000005045
ENSG00000125378
Bone morphogenetic protein 4 precursor
Low tissue specificity
Detected in many
BMPER
ENSSSCG00000016665
ENSG00000164619
BMP binding endothelial regulator
Tissue enhanced
Detected in many
cartilage:
59.5
BMPR1B
ENSSSCG00000029621
ENSG00000138696
Bone morphogenetic protein receptor type-1B
Tissue enhanced
Detected in many
male glands:
30.2
ovary:
56.6
BMS1
ENSSSCG00000010198
ENSG00000165733
BMS1, ribosome biogenesis factor
Low tissue specificity
Detected in all
BRAF
ENSSSCG00000016494
ENSG00000157764
B-Raf proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
BRF1
ENSSSCG00000031710
ENSG00000185024
BRF1, RNA polymerase III transcription initiation factor subunit
Low tissue specificity
Detected in all
C1R
ENSSSCG00000000675
ENSG00000159403
Complement C1r
Tissue enhanced
Detected in many
liver:
178.7
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C2CD3
ENSSSCG00000014835
ENSG00000168014
C2 calcium dependent domain containing 3
Low tissue specificity
Detected in all
C5orf42
ENSSSCG00000016843
ENSG00000197603
Chromosome 5 open reading frame 42
Low tissue specificity
Detected in all
C7orf43
ENSSSCG00000007647
ENSG00000146826
Chromosome 7 open reading frame 43
Low tissue specificity
Detected in all
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CANT1
ENSSSCG00000038130
ENSG00000171302
Calcium activated nucleotidase 1
Low tissue specificity
Detected in all
CASK
ENSSSCG00000012253
ENSG00000147044
Calcium/calmodulin dependent serine protein kinase
Low tissue specificity
Detected in all
CASP14
ENSSSCG00000013835
ENSG00000105141
Caspase 14
Group enriched
Detected in some
ovary:
18.0
skin:
34.9
CBL
ENSSSCG00000015115
ENSG00000110395
Cbl proto-oncogene
Tissue enhanced
Detected in all
lymphoid tissue:
74.6
CC2D2A
ENSSSCG00000008738
ENSG00000048342
Coiled-coil and C2 domain containing 2A
Low tissue specificity
Detected in all
CCBE1
ENSSSCG00000004907
ENSG00000183287
Collagen and calcium binding EGF domains 1
Tissue enriched
Detected in many
adrenal gland:
69.4
CCDC174
ENSSSCG00000040702
ENSG00000154781
Coiled-coil domain-containing protein 174
Low tissue specificity
Detected in all
CCDC22
ENSSSCG00000012297
ENSG00000101997
Coiled-coil domain containing 22
Low tissue specificity
Detected in all
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