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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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658 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FARS2
ENSSSCG00000038717
ENSG00000145982
Phenylalanyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
FASTKD2
ENSSSCG00000016134
ENSG00000118246
FAST kinase domains 2
Low tissue specificity
Detected in all
FBP1
ENSSSCG00000031174
ENSG00000165140
Fructose-1,6-bisphosphatase 1
Tissue enhanced
Detected in all
kidney:
61.0
liver:
48.3
FBXL4
ENSSSCG00000004347
ENSG00000112234
F-box/LRR-repeat protein 4
Low tissue specificity
Detected in all
FECH
ENSSSCG00000004541
ENSG00000066926
Ferrochelatase, mitochondrial
Tissue enhanced
Detected in all
choroid plexus:
75.1
FGF23
ENSSSCG00000039492
ENSG00000118972
Fibroblast growth factor 23
Low tissue specificity
Detected in all
FH
ENSSSCG00000028178
ENSG00000091483
Fumarate hydratase, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
54.3
FKRP
ENSSSCG00000003103
ENSG00000181027
Fukutin related protein
Low tissue specificity
Detected in all
FKTN
ENSSSCG00000005427
ENSG00000106692
Fukutin
Low tissue specificity
Detected in all
FMO3
ENSSSCG00000023472
ENSG00000007933
Flavin containing monooxygenase 3
Tissue enhanced
Detected in many
liver:
20.8
upper respiratory system:
18.2
FOXRED1
ENSSSCG00000030017
ENSG00000110074
FAD-dependent oxidoreductase domain-containing protein 1
Tissue enhanced
Detected in all
liver:
63.9
FUCA1
ENSSSCG00000027659
ENSG00000179163
Tissue alpha-L-fucosidase precursor
Low tissue specificity
Detected in all
FXYD2
ENSSSCG00000015084
ENSG00000137731
Sodium/potassium-transporting ATPase subunit gamma
Tissue enriched
Detected in some
kidney:
108.6
G6PC
ENSSSCG00000036449
ENSG00000131482
Glucose-6-phosphatase
Group enriched
Detected in many
kidney:
43.9
liver:
87.0
G6PD
ENSSSCG00000025108
ENSG00000160211
Glucose-6-phosphate dehydrogenase
Low tissue specificity
Detected in all
GAA
ENSSSCG00000017156
ENSG00000171298
Glucosidase alpha, acid
Low tissue specificity
Detected in all
GALC
ENSSSCG00000027865
ENSG00000054983
Galactocerebrosidase
Tissue enhanced
Detected in all
testis:
25.0
GALE
ENSSSCG00000027827
ENSG00000117308
UDP-galactose-4-epimerase
Tissue enhanced
Detected in all
male glands:
50.1
stomach:
34.9
GALK1
ENSSSCG00000017203
ENSG00000108479
Galactokinase 1
Low tissue specificity
Detected in all
GALNS
ENSSSCG00000002645
ENSG00000141012
N-acetylgalactosamine-6-sulfatase precursor
Low tissue specificity
Detected in all
GALNT3
ENSSSCG00000015907
ENSG00000115339
Polypeptide N-acetylgalactosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
44.6
testis:
29.6
GALT
ENSSSCG00000010969
ENSG00000213930
Galactose-1-phosphate uridylyltransferase
Low tissue specificity
Detected in all
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GATM
ENSSSCG00000004672
ENSG00000171766
Glycine amidinotransferase, mitochondrial
Tissue enhanced
Detected in all
kidney:
41.3
liver:
75.6
male glands:
39.5
GBA
ENSSSCG00000006522
ENSG00000177628
Glucosylceramidase precursor
Low tissue specificity
Detected in all
GBE1
ENSSSCG00000012000
ENSG00000114480
1,4-alpha-glucan branching enzyme 1
Tissue enhanced
Detected in all
cartilage:
61.9
GCDH
ENSSSCG00000013729
ENSG00000105607
Glutaryl-CoA dehydrogenase
Low tissue specificity
Detected in all
GCH1
ENSSSCG00000035715
ENSG00000131979
GTP cyclohydrolase 1
Tissue enhanced
Detected in all
ovary:
25.6
pineal gland:
29.0
GCK
ENSSSCG00000016751
ENSG00000106633
Myosin regulatory light chain 2, atrial isoform
Tissue enriched
Detected in some
heart:
414.0
GCLC
ENSSSCG00000001488
ENSG00000001084
Glutamate-cysteine ligase catalytic subunit
Tissue enhanced
Detected in all
lens:
59.0
GFM1
ENSSSCG00000025651
ENSG00000168827
G elongation factor mitochondrial 1
Low tissue specificity
Detected in all
GGCX
ENSSSCG00000027381
ENSG00000115486
Gamma-glutamyl carboxylase
Low tissue specificity
Detected in all
GJC2
ENSSSCG00000013989
ENSG00000198835
Gap junction protein gamma 2
Tissue enriched
Detected in some
brain:
58.1
GLA
ENSSSCG00000038423
ENSG00000102393
Alpha-galactosidase A
Tissue enhanced
Detected in all
ovary:
35.6
GLB1
ENSSSCG00000024119
ENSG00000170266
Galactosidase beta 1
Tissue enhanced
Detected in all
male glands:
56.2
GLDC
ENSSSCG00000005199
ENSG00000178445
Glycine decarboxylase
Group enriched
Detected in many
epididymis:
38.7
lens:
35.9
liver:
19.2
retina:
14.6
GLUL
ENSSSCG00000015545
ENSG00000135821
Glutamine synthetase
Tissue enhanced
Detected in all
brain:
161.1
GLYCTK
ENSSSCG00000011432
ENSG00000168237
Glycerate kinase
Group enriched
Detected in many
kidney:
25.0
liver:
55.7
GM2A
ENSSSCG00000017087
ENSG00000196743
GM2 ganglioside activator
Tissue enhanced
Detected in all
ovary:
56.9
GNA11
ENSSSCG00000029279
ENSG00000088256
Guanine nucleotide-binding protein subunit alpha-11
Low tissue specificity
Detected in all
GNE
ENSSSCG00000037468
ENSG00000159921
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase
Tissue enriched
Detected in all
male glands:
122.3
GNMT
ENSSSCG00000033214
ENSG00000124713
Glycine N-methyltransferase
Tissue enriched
Detected in many
liver:
57.7
GNPAT
ENSSSCG00000010175
ENSG00000116906
Dihydroxyacetone phosphate acyltransferase
Low tissue specificity
Detected in all
GNPTAB
ENSSSCG00000000862
ENSG00000111670
N-acetylglucosamine-1-phosphate transferase alpha and beta subunits
Low tissue specificity
Detected in all
GNPTG
ENSSSCG00000008031
ENSG00000090581
N-acetylglucosamine-1-phosphate transferase gamma subunit
Low tissue specificity
Detected in all
GNS
ENSSSCG00000023715
ENSG00000135677
Glucosamine (N-acetyl)-6-sulfatase
Low tissue specificity
Detected in all
GPHN
ENSSSCG00000002285
ENSG00000171723
Gephyrin
Low tissue specificity
Detected in all
GRHPR
ENSSSCG00000005349
ENSG00000137106
Glyoxylate and hydroxypyruvate reductase
Tissue enhanced
Detected in all
liver:
60.7
GRN
ENSSSCG00000017355
ENSG00000030582
Granulins precursor
Low tissue specificity
Detected in all
GSS
ENSSSCG00000007287
ENSG00000100983
Glutathione synthetase
Tissue enriched
Detected in all
lens:
109.2
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