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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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658 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CYP2D25
ENSSSCG00000000046
ENSG00000100197
Vitamin D(3) 25-hydroxylase
Group enriched
Detected in some
kidney:
72.5
liver:
215.7
CYP2R1
ENSSSCG00000013389
ENSG00000186104
Cytochrome P450 family 2 subfamily R member 1
Low tissue specificity
Detected in all
CYTB
ENSSSCG00000018094
ENSG00000198727
Cytochrome b (mitochondrion)
Tissue enhanced
Detected in all
heart:
1273.8
D2HGDH
ENSSSCG00000034101
ENSG00000180902
Galactose-3-O-sulfotransferase 2
Low tissue specificity
Detected in all
DAG1
ENSSSCG00000034357
ENSG00000173402
Dystroglycan 1
Tissue enhanced
Detected in all
vagus nerve:
122.6
DARS
ENSSSCG00000015689
ENSG00000115866
Aspartyl-tRNA synthetase
Low tissue specificity
Detected in all
DARS2
ENSSSCG00000015492
ENSG00000117593
Aspartyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
DBT
ENSSSCG00000006866
ENSG00000137992
Dihydrolipoamide branched chain transacylase E2
Low tissue specificity
Detected in all
DCXR
ENSSSCG00000039873
ENSG00000169738
Dicarbonyl and L-xylulose reductase
Tissue enhanced
Detected in all
thyroid gland:
93.7
DDOST
ENSSSCG00000003505
ENSG00000244038
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor
Low tissue specificity
Detected in all
DGUOK
ENSSSCG00000008293
ENSG00000114956
Deoxyguanosine kinase
Low tissue specificity
Detected in all
DHCR7
ENSSSCG00000021181
ENSG00000172893
7-dehydrocholesterol reductase
Tissue enhanced
Detected in all
liver:
65.5
ovary:
37.3
DLAT
ENSSSCG00000015030
ENSG00000150768
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial precursor
Low tissue specificity
Detected in all
DLD
ENSSSCG00000015443
ENSG00000091140
Dihydrolipoyl dehydrogenase, mitochondrial precursor
Tissue enhanced
Detected in all
skeletal muscle:
65.7
DMGDH
ENSSSCG00000014110
ENSG00000132837
Dimethylglycine dehydrogenase
Group enriched
Detected in some
kidney:
50.6
liver:
81.6
DMP1
ENSSSCG00000009220
ENSG00000152592
Dentin matrix acidic phosphoprotein 1 precursor
Tissue enhanced
Detected in many
bone marrow:
32.0
brain:
20.7
DNA2
ENSSSCG00000010240
ENSG00000138346
DNA replication helicase/nuclease 2
Low tissue specificity
Detected in all
DNAJC19
ENSSSCG00000011770
ENSG00000205981
Mitochondrial import inner membrane translocase subunit TIM14
Low tissue specificity
Detected in all
DNAJC5
ENSSSCG00000031602
ENSG00000101152
DnaJ heat shock protein family (Hsp40) member C5
Low tissue specificity
Detected in all
DNM1L
ENSSSCG00000000529
ENSG00000087470
Dynamin 1 like
Low tissue specificity
Detected in all
DOLK
ENSSSCG00000005666
ENSG00000175283
Dolichol kinase
Low tissue specificity
Detected in all
DPAGT1
ENSSSCG00000015110
ENSG00000172269
Dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
Low tissue specificity
Detected in all
DPM1
ENSSSCG00000034952
ENSG00000000419
Dolichol-phosphate mannosyltransferase subunit 1
Low tissue specificity
Detected in all
DPM2
ENSSSCG00000032481
ENSG00000136908
Dolichol phosphate-mannose biosynthesis regulatory protein
Low tissue specificity
Detected in all
DPM3
ENSSSCG00000006528
ENSG00000179085
Dolichyl-phosphate mannosyltransferase subunit 3
Tissue enhanced
Detected in many
pineal gland:
14.0
DPYD
ENSSSCG00000006878
ENSG00000188641
Dihydropyrimidine dehydrogenase
Tissue enhanced
Detected in all
kidney:
52.3
liver:
46.7
DPYS
ENSSSCG00000006040
ENSG00000147647
Dihydropyrimidinase
Tissue enriched
Detected in some
liver:
91.5
DTNBP1
ENSSSCG00000001062
ENSG00000047579
Dysbindin
Low tissue specificity
Detected in all
EARS2
ENSSSCG00000010797
ENSG00000103356
Glutamyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
ECM1
ENSSSCG00000029230
ENSG00000143369
Extracellular matrix protein 1
Tissue enhanced
Detected in many
mouth:
84.5
synovial tissue:
66.5
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
EGF
ENSSSCG00000009134
ENSG00000138798
Pro-epidermal growth factor precursor
Tissue enhanced
Detected in many
choroid plexus:
46.4
kidney:
90.0
male glands:
52.2
salivary gland:
32.6
EHHADH
ENSSSCG00000040296
ENSG00000113790
Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase
Group enriched
Detected in all
kidney:
52.9
liver:
89.3
EIF2B2
ENSSSCG00000002377
ENSG00000119718
Eukaryotic translation initiation factor 2B subunit beta
Low tissue specificity
Detected in all
EIF2B3
ENSSSCG00000029808
ENSG00000070785
Eukaryotic translation initiation factor 2B subunit gamma
Low tissue specificity
Detected in all
EIF2B4
ENSSSCG00000023140
ENSG00000115211
Eukaryotic translation initiation factor 2B subunit delta
Low tissue specificity
Detected in all
EIF2B5
ENSSSCG00000011783
ENSG00000145191
Eukaryotic translation initiation factor 2B subunit epsilon
Low tissue specificity
Detected in all
ELAC2
ENSSSCG00000028465
ENSG00000006744
Zinc phosphodiesterase ELAC protein 2
Low tissue specificity
Detected in all
ENO3
ENSSSCG00000017904
ENSG00000108515
Beta-enolase
Tissue enriched
Detected in many
skeletal muscle:
421.4
ENPP1
ENSSSCG00000004193
ENSG00000197594
Ectonucleotide pyrophosphatase/phosphodiesterase 1
Tissue enriched
Detected in many
cartilage:
130.3
EPHX1
ENSSSCG00000010853
ENSG00000143819
Epoxide hydrolase 1 precursor
Tissue enhanced
Detected in all
choroid plexus:
175.4
liver:
129.4
ETFA
ENSSSCG00000001862
ENSG00000140374
Electron transfer flavoprotein subunit alpha, mitochondrial
Low tissue specificity
Detected in all
ETFB
ENSSSCG00000003229
ENSG00000105379
Electron transfer flavoprotein subunit beta
Low tissue specificity
Detected in all
ETFDH
ENSSSCG00000008877
ENSG00000171503
Electron transfer flavoprotein dehydrogenase
Tissue enhanced
Detected in all
heart:
56.8
skeletal muscle:
62.0
ETHE1
ENSSSCG00000003064
ENSG00000105755
ETHE1, persulfide dioxygenase
Tissue enriched
Detected in all
large intestine:
109.6
EXT1
ENSSSCG00000006009
ENSG00000182197
Exostosin glycosyltransferase 1
Low tissue specificity
Detected in all
EXT2
ENSSSCG00000013281
ENSG00000151348
Exostosin glycosyltransferase 2
Low tissue specificity
Detected in all
FAH
ENSSSCG00000001780
ENSG00000103876
Fumarylacetoacetate hydrolase
Tissue enhanced
Detected in many
adrenal gland:
53.6
liver:
74.4
FAM126A
ENSSSCG00000015386
ENSG00000122591
Family with sequence similarity 126 member A
Low tissue specificity
Detected in all
FAR1
ENSSSCG00000021170
ENSG00000197601
Fatty acyl-CoA reductase 1
Tissue enhanced
Detected in all
male glands:
76.8
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