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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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310 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCB6
ENSSSCG00000016210
ENSG00000115657
ATP binding cassette subfamily B member 6 (Langereis blood group)
Tissue enhanced
Detected in all
large intestine:
37.4
ABCB7
ENSSSCG00000012424
ENSG00000131269
ATP binding cassette subfamily B member 7
Low tissue specificity
Detected in all
ABCC6
ENSSSCG00000007873
ENSG00000091262
ATP binding cassette subfamily C member 6
Tissue enriched
Detected in some
liver:
71.9
ABCC9
ENSSSCG00000000571
ENSG00000069431
ATP binding cassette subfamily C member 9
Tissue enhanced
Detected in many
heart:
57.6
skeletal muscle:
40.3
ABCG5
ENSSSCG00000035912
ENSG00000138075
ATP binding cassette subfamily G member 5
Group enriched
Detected in some
liver:
30.9
small intestine:
12.6
ABCG8
ENSSSCG00000008453
ENSG00000143921
ATP binding cassette subfamily G member 8
Low tissue specificity
Detected in all
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTC1
ENSSSCG00000004803
ENSG00000159251
Actin, alpha cardiac muscle 1
Tissue enriched
Detected in some
heart:
271.3
ACTN1
ENSSSCG00000036702
ENSG00000072110
Alpha-actinin-1
Tissue enhanced
Detected in all
smooth muscle:
150.4
ACTN2
ENSSSCG00000010144
ENSG00000077522
Alpha-actinin-2
Group enriched
Detected in many
heart:
140.1
skeletal muscle:
224.2
ACVRL1
ENSSSCG00000000232
ENSG00000139567
Activin A receptor like type 1
Low tissue specificity
Detected in many
ADA2
ENSSSCG00000035218
ENSG00000093072
Adenosine deaminase 2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
41.2
ADAMTS13
ENSSSCG00000021241
ENSG00000160323
ADAM metallopeptidase with thrombospondin type 1 motif 13
Tissue enhanced
Detected in many
adipose tissue:
9.1
gallbladder:
7.5
liver:
16.7
urinary bladder:
8.6
AK1
ENSSSCG00000005627
ENSG00000106992
Adenylate kinase isoenzyme 1
Tissue enriched
Detected in many
skeletal muscle:
215.4
AKAP9
ENSSSCG00000015310
ENSG00000127914
A-kinase anchor protein 9
Low tissue specificity
Detected in all
AMN
ENSSSCG00000002524
ENSG00000166126
Amnion associated transmembrane protein
Tissue enriched
Detected in some
kidney:
94.2
ANK1
ENSSSCG00000007022
ENSG00000029534
Ankyrin 1
Group enriched
Detected in many
brain:
25.8
heart:
50.3
skeletal muscle:
67.1
ANK2
ENSSSCG00000009125
ENSG00000145362
Ankyrin 2
Tissue enhanced
Detected in many
brain:
39.6
lens:
88.5
ANO6
ENSSSCG00000000804
ENSG00000177119
Anoctamin 6
Low tissue specificity
Detected in all
ANTXR1
ENSSSCG00000008340
ENSG00000169604
Anthrax toxin receptor 1
Tissue enhanced
Detected in all
cervix:
100.2
ASXL1
ENSSSCG00000007248
ENSG00000171456
Additional sex combs like 1, transcriptional regulator
Low tissue specificity
Detected in all
ATRX
ENSSSCG00000012434
ENSG00000085224
ATRX, chromatin remodeler
Low tissue specificity
Detected in all
B2M
ENSSSCG00000004687
ENSG00000166710
Beta-2-microglobulin
Low tissue specificity
Detected in all
BMPR2
ENSSSCG00000016113
ENSG00000204217
Bone morphogenetic protein receptor type-2 precursor
Low tissue specificity
Detected in all
BPGM
ENSSSCG00000039425
ENSG00000172331
Bisphosphoglycerate mutase
Group enriched
Detected in all
choroid plexus:
64.2
lens:
67.5
BRCA2
ENSSSCG00000029039
ENSG00000139618
BRCA2, DNA repair associated
Tissue enhanced
Detected in many
lymphoid tissue:
17.0
BRIP1
ENSSSCG00000021384
ENSG00000136492
BRCA1 interacting protein C-terminal helicase 1
Low tissue specificity
Detected in all
C15orf41
ENSSSCG00000026900
ENSG00000186073
Chromosome 15 open reading frame 41
Low tissue specificity
Detected in all
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
CACNA1C
ENSSSCG00000027725
ENSG00000151067
Calcium voltage-gated channel subunit alpha1 C
Tissue enhanced
Detected in many
heart:
35.8
smooth muscle:
38.1
CACNB2
ENSSSCG00000011040
ENSG00000165995
Calcium voltage-gated channel auxiliary subunit beta 2
Low tissue specificity
Detected in all
CASQ2
ENSSSCG00000006745
ENSG00000118729
Calsequestrin 2
Tissue enriched
Detected in many
heart:
100.4
CAV1
ENSSSCG00000016634
ENSG00000105974
Caveolin-1 isoform a
Tissue enhanced
Detected in many
penis:
98.1
CAV3
ENSSSCG00000040643
ENSG00000182533
Caveolin-3
Tissue enhanced
Detected in some
heart:
35.4
skeletal muscle:
41.0
synovial tissue:
10.2
CCM2
ENSSSCG00000016734
ENSG00000136280
CCM2 scaffolding protein
Tissue enhanced
Detected in all
lens:
84.1
CDAN1
ENSSSCG00000004719
ENSG00000140326
Codanin 1
Low tissue specificity
Detected in all
CITED2
ENSSSCG00000004142
ENSG00000164442
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2
Low tissue specificity
Detected in all
COX4I2
ENSSSCG00000038384
ENSG00000131055
Cytochrome c oxidase subunit 4I2
Tissue enhanced
Detected in many
cartilage:
113.6
CSRP3
ENSSSCG00000013354
ENSG00000129170
Cysteine and glycine-rich protein 3
Tissue enhanced
Detected in some
heart:
197.1
mouth:
44.4
skeletal muscle:
37.6
synovial tissue:
67.7
CUBN
ENSSSCG00000011030
ENSG00000107611
Cubilin
Tissue enriched
Detected in some
kidney:
124.4
CX3CR1
ENSSSCG00000024024
ENSG00000168329
C-X3-C motif chemokine receptor 1
Group enriched
Detected in many
brain:
43.4
pineal gland:
12.1
CYB5A
ENSSSCG00000004875
ENSG00000166347
Cytochrome b5
Tissue enhanced
Detected in all
ovary:
184.6
testis:
159.0
CYB5R3
ENSSSCG00000000038
ENSG00000100243
Cytochrome b5 reductase 3
Low tissue specificity
Detected in all
DCHS1
ENSSSCG00000029189
ENSG00000166341
Dachsous cadherin-related 1
Tissue enhanced
Detected in many
cartilage:
47.4
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DMD
ENSSSCG00000028148
ENSG00000198947
Dystrophin
Tissue enhanced
Detected in many
skeletal muscle:
82.6
vagus nerve:
69.3
DNMT3A
ENSSSCG00000029413
ENSG00000119772
DNA (cytosine-5)-methyltransferase 3A
Low tissue specificity
Detected in all
DPP6
ENSSSCG00000016423
ENSG00000130226
Dipeptidyl peptidase like 6
Tissue enriched
Detected in some
brain:
44.0
DSG2
ENSSSCG00000022739
ENSG00000046604
Desmoglein 2
Tissue enhanced
Detected in many
large intestine:
62.7
male glands:
37.6
DSP
ENSSSCG00000001025
ENSG00000096696
Desmoplakin
Tissue enhanced
Detected in all
cornea:
119.8
mouth:
102.2
skin:
94.4
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