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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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310 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DTNA
ENSSSCG00000028047
ENSG00000134769
Dystrobrevin alpha
Tissue enhanced
Detected in many
lens:
51.0
skeletal muscle:
55.0
EGLN1
ENSSSCG00000010172
ENSG00000135766
Egl-9 family hypoxia inducible factor 1
Low tissue specificity
Detected in all
EIF2AK4
ENSSSCG00000039061
ENSG00000128829
Eukaryotic translation initiation factor 2 alpha kinase 4
Low tissue specificity
Detected in all
ELMO2
ENSSSCG00000023306
ENSG00000062598
Engulfment and cell motility 2
Low tissue specificity
Detected in all
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
ENG
ENSSSCG00000005625
ENSG00000106991
Endoglin precursor
Low tissue specificity
Detected in all
ENPP1
ENSSSCG00000004193
ENSG00000197594
Ectonucleotide pyrophosphatase/phosphodiesterase 1
Tissue enriched
Detected in many
cartilage:
130.3
EPAS1
ENSSSCG00000008443
ENSG00000116016
Endothelial PAS domain-containing protein 1
Low tissue specificity
Detected in many
EPB41
ENSSSCG00000003586
ENSG00000159023
Erythrocyte membrane protein band 4.1
Group enriched
Detected in all
brain:
60.3
lens:
131.3
lymphoid tissue:
47.6
EPB42
ENSSSCG00000004714
ENSG00000166947
Erythrocyte membrane protein band 4.2
Low tissue specificity
Detected in all
EPOR
ENSSSCG00000013618
ENSG00000187266
Erythropoietin receptor
Tissue enhanced
Detected in many
brain:
9.0
lymphoid tissue:
10.8
ERCC4
ENSSSCG00000007881
ENSG00000175595
ERCC excision repair 4, endonuclease catalytic subunit
Low tissue specificity
Detected in all
ETV6
ENSSSCG00000024152
ENSG00000139083
ETS variant 6
Low tissue specificity
Detected in all
EYA4
ENSSSCG00000034139
ENSG00000112319
EYA transcriptional coactivator and phosphatase 4
Tissue enhanced
Detected in many
pituitary gland:
18.8
skeletal muscle:
49.3
upper respiratory system:
19.9
F10
ENSSSCG00000009558
ENSG00000126218
Coagulation factor X precursor
Tissue enriched
Detected in many
liver:
84.8
F12
ENSSSCG00000031274
ENSG00000131187
Coagulation factor XII precursor
Tissue enriched
Detected in many
liver:
125.1
F13A1
ENSSSCG00000024310
ENSG00000124491
Coagulation factor XIII A chain
Tissue enhanced
Detected in many
skin:
36.9
upper respiratory system:
26.2
F13B
ENSSSCG00000023301
ENSG00000143278
Coagulation factor XIII B chain
Tissue enriched
Detected in all
liver:
46.6
F2
ENSSSCG00000013252
ENSG00000180210
Prothrombin precursor
Tissue enriched
Detected in some
liver:
165.9
F5
ENSSSCG00000006289
ENSG00000198734
Coagulation factor V precursor
Tissue enhanced
Detected in many
brain:
29.6
liver:
63.5
salivary gland:
23.0
upper respiratory system:
23.6
F7
ENSSSCG00000029503
ENSG00000057593
Coagulation factor VII precursor
Tissue enriched
Detected in many
liver:
44.1
F8
ENSSSCG00000012818
ENSG00000185010
Coagulation factor VIII precursor
Tissue enhanced
Detected in many
penis:
47.6
F9
ENSSSCG00000012711
ENSG00000101981
Coagulation factor IX
Tissue enriched
Detected in some
liver:
146.3
FANCA
ENSSSCG00000024687
ENSG00000187741
Fanconi anemia complementation group A
Low tissue specificity
Detected in all
FANCB
ENSSSCG00000012130
ENSG00000181544
Fanconi anemia complementation group B
Tissue enhanced
Detected in many
epididymis:
15.1
lymphoid tissue:
11.8
FANCC
ENSSSCG00000033654
ENSG00000158169
Fanconi anemia complementation group C
Low tissue specificity
Detected in all
FANCD2
ENSSSCG00000011563
ENSG00000144554
Fanconi anemia complementation group D2
Tissue enhanced
Detected in many
testis:
37.0
FANCF
ENSSSCG00000037501
ENSG00000183161
Fanconi anemia complementation group F
Low tissue specificity
Detected in all
FANCG
ENSSSCG00000034874
ENSG00000221829
Fanconi anemia complementation group G
Low tissue specificity
Detected in all
FANCI
ENSSSCG00000001837
ENSG00000140525
Fanconi anemia complementation group I
Tissue enhanced
Detected in many
lymphoid tissue:
20.6
FANCL
ENSSSCG00000008394
ENSG00000115392
Fanconi anemia complementation group L
Low tissue specificity
Detected in all
FANCM
ENSSSCG00000005000
ENSG00000187790
Fanconi anemia complementation group M
Low tissue specificity
Detected in all
FGB
ENSSSCG00000008997
ENSG00000171564
Fibrinogen beta chain precursor
Tissue enriched
Detected in some
liver:
413.6
FGG
ENSSSCG00000024314
ENSG00000171557
Fibrinogen gamma chain precursor
Tissue enriched
Detected in some
liver:
270.2
FKTN
ENSSSCG00000005427
ENSG00000106692
Fukutin
Low tissue specificity
Detected in all
FLI1
ENSSSCG00000015237
ENSG00000151702
Fli-1 proto-oncogene, ETS transcription factor
Low tissue specificity
Detected in many
FLT4
ENSSSCG00000014007
ENSG00000037280
Fms related tyrosine kinase 4
Low tissue specificity
Detected in many
FLVCR2
ENSSSCG00000021606
ENSG00000119686
Feline leukemia virus subgroup C receptor-related protein 2
Tissue enhanced
Detected in many
liver:
25.8
lung:
43.1
FOXE3
ENSSSCG00000003884
ENSG00000186790
Forkhead box E3
Tissue enriched
Detected in some
lens:
18.8
FYB1
ENSSSCG00000016855
ENSG00000082074
FYN binding protein 1
Tissue enriched
Detected in all
lymphoid tissue:
145.6
G6PC3
ENSSSCG00000017365
ENSG00000141349
Glucose-6-phosphatase catalytic subunit 3
Low tissue specificity
Detected in all
G6PD
ENSSSCG00000025108
ENSG00000160211
Glucose-6-phosphate dehydrogenase
Low tissue specificity
Detected in all
GATA1
ENSSSCG00000027237
ENSG00000102145
Erythroid transcription factor
Low tissue specificity
Detected in many
GATA2
ENSSSCG00000011618
ENSG00000179348
Endothelial transcription factor GATA-2
Tissue enriched
Detected in many
male glands:
214.6
GATA4
ENSSSCG00000022383
ENSG00000136574
Transcription factor GATA-4
Tissue enhanced
Detected in some
heart:
36.1
small intestine:
21.6
stomach:
67.0
GATA6
ENSSSCG00000003702
ENSG00000141448
Transcription factor GATA-6
Tissue enhanced
Detected in many
adrenal gland:
48.9
heart:
39.4
ovary:
36.9
stomach:
41.6
GATAD1
ENSSSCG00000031835
ENSG00000157259
GATA zinc finger domain containing 1
Low tissue specificity
Detected in all
GCLC
ENSSSCG00000001488
ENSG00000001084
Glutamate-cysteine ligase catalytic subunit
Tissue enhanced
Detected in all
lens:
59.0
GCNT2
ENSSSCG00000033009
ENSG00000111846
Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
Low tissue specificity
Detected in all
GDF2
ENSSSCG00000010375
ENSG00000263761
Growth differentiation factor 2
Tissue enriched
Detected in some
liver:
16.7
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