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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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503 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABAT
ENSSSCG00000007909
ENSG00000183044
4-aminobutyrate aminotransferase, mitochondrial
Tissue enhanced
Detected in many
brain:
48.0
kidney:
43.5
liver:
29.0
ADAM28
ENSSSCG00000009644
ENSG00000042980
ADAM metallopeptidase domain 28
Tissue enhanced
Detected in all
epididymis:
81.1
urinary bladder:
46.5
ADAMTS13
ENSSSCG00000021241
ENSG00000160323
ADAM metallopeptidase with thrombospondin type 1 motif 13
Tissue enhanced
Detected in many
adipose tissue:
9.1
gallbladder:
7.5
liver:
16.7
urinary bladder:
8.6
ADAMTS8
ENSSSCG00000015249
ENSG00000134917
ADAM metallopeptidase with thrombospondin type 1 motif 8
Tissue enhanced
Detected in many
smooth muscle:
17.8
urinary bladder:
18.6
ADHFE1
ENSSSCG00000006213
ENSG00000147576
Alcohol dehydrogenase, iron containing 1
Tissue enhanced
Detected in all
kidney:
35.5
AHRR
ENSSSCG00000032843
ENSG00000063438
Aryl-hydrocarbon receptor repressor
Tissue enhanced
Detected in some
mouth:
16.8
skin:
23.9
stomach:
11.8
urinary bladder:
14.5
AIRE
ENSSSCG00000025294
ENSG00000160224
Autoimmune regulator
Tissue enhanced
Detected in some
brain:
8.2
kidney:
7.0
lymphoid tissue:
7.3
pituitary gland:
6.2
AKR1B1
ENSSSCG00000040608
ENSG00000085662
Aldose reductase
Tissue enhanced
Detected in all
kidney:
55.9
lens:
113.2
male glands:
56.6
AKR7A2
ENSSSCG00000003491
ENSG00000053371,ENSG00000162482
Aflatoxin B1 aldehyde reductase member 2
Tissue enhanced
Detected in all
kidney:
78.9
liver:
51.0
ALDH1B1
ENSSSCG00000005361
ENSG00000137124
Aldehyde dehydrogenase 1 family member B1
Tissue enhanced
Detected in many
kidney:
70.6
ALDH4A1
ENSSSCG00000024752
ENSG00000159423
Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
kidney:
61.1
liver:
78.9
ALDH6A1
ENSSSCG00000002357
ENSG00000119711
Aldehyde dehydrogenase 6 family member A1
Tissue enhanced
Detected in all
kidney:
85.2
ALPL
ENSSSCG00000032607
ENSG00000162551
Alkaline phosphatase, liver/bone/kidney
Tissue enhanced
Detected in many
dura mater:
56.0
kidney:
77.7
ALX1
ENSSSCG00000036744
ENSG00000180318
ALX homeobox 1
Tissue enhanced
Detected in many
kidney:
16.7
upper respiratory system:
8.8
ANKRD53
ENSSSCG00000031976
ENSG00000144031
Ankyrin repeat domain 53
Tissue enhanced
Detected in many
adipose tissue:
11.9
kidney:
26.0
testis:
24.9
APBB2
ENSSSCG00000022168
ENSG00000163697
Amyloid beta precursor protein binding family B member 2
Tissue enhanced
Detected in all
kidney:
79.7
APELA
ENSSSCG00000031750
ENSG00000248329
Apelin receptor early endogenous ligand
Tissue enhanced
Detected in many
brain:
45.9
kidney:
46.6
AQP3
ENSSSCG00000040513
ENSG00000165272
Aquaporin-3
Tissue enhanced
Detected in many
kidney:
52.7
mouth:
41.9
upper respiratory system:
73.3
ARHGAP24
ENSSSCG00000009229
ENSG00000138639
Rho GTPase activating protein 24
Tissue enhanced
Detected in all
kidney:
44.3
lens:
48.2
pineal gland:
47.9
ARL4D
ENSSSCG00000017380
ENSG00000175906
ADP ribosylation factor like GTPase 4D
Tissue enhanced
Detected in many
dura mater:
20.3
kidney:
25.1
ARMCX1
ENSSSCG00000038569
ENSG00000126947
Armadillo repeat containing, X-linked 1
Tissue enhanced
Detected in many
kidney:
23.4
ARSB
ENSSSCG00000038535
ENSG00000113273
Arylsulfatase B
Tissue enhanced
Detected in many
brain:
56.3
kidney:
31.9
ASB13
ENSSSCG00000011145
ENSG00000196372
Ankyrin repeat and SOCS box containing 13
Tissue enhanced
Detected in all
kidney:
56.4
ASCL2
ENSSSCG00000033507
ENSG00000183734
Achaete-scute homolog 2
Tissue enhanced
Detected in some
cornea:
18.8
large intestine:
9.5
small intestine:
10.7
urinary bladder:
9.3
ASPA
ENSSSCG00000017861
ENSG00000108381
Aspartoacylase
Tissue enhanced
Detected in many
brain:
56.0
kidney:
19.8
vagus nerve:
32.5
ATP1A1
ENSSSCG00000006740
ENSG00000163399
Sodium/potassium-transporting ATPase subunit alpha-1 precursor
Tissue enhanced
Detected in all
kidney:
127.3
male glands:
141.9
ATP1B1
ENSSSCG00000006296
ENSG00000143153
Sodium/potassium-transporting ATPase subunit beta-1
Tissue enhanced
Detected in all
kidney:
110.2
male glands:
224.2
ATP6V0D2
ENSSSCG00000006138
ENSG00000147614
ATPase H+ transporting V0 subunit d2
Tissue enhanced
Detected in some
dura mater:
21.1
endometrium:
29.5
kidney:
12.3
ATP8B4
ENSSSCG00000004646
ENSG00000104043
ATPase phospholipid transporting 8B4 (putative)
Tissue enhanced
Detected in many
kidney:
24.9
AVPR2
ENSSSCG00000012789
ENSG00000126895
Vasopressin V2 receptor
Tissue enhanced
Detected in many
ductus deferens:
10.9
kidney:
16.5
male glands:
19.8
B3GNT8
ENSSSCG00000032536
ENSG00000177191
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
Tissue enhanced
Detected in many
kidney:
20.7
large intestine:
11.7
BAIAP2L2
ENSSSCG00000000111
ENSG00000128298
BAI1 associated protein 2 like 2
Tissue enhanced
Detected in many
epididymis:
25.4
kidney:
40.6
large intestine:
45.5
small intestine:
45.7
BBOX1
ENSSSCG00000013337
ENSG00000129151
Gamma-butyrobetaine hydroxylase 1
Tissue enhanced
Detected in some
brain:
16.3
kidney:
49.8
liver:
20.6
BCAR1
ENSSSCG00000028878
ENSG00000050820
BCAR1, Cas family scaffolding protein
Tissue enhanced
Detected in all
kidney:
80.1
BEND4
ENSSSCG00000008802
ENSG00000188848
BEN domain containing 4
Tissue enhanced
Detected in some
cartilage:
50.4
epididymis:
20.3
kidney:
12.3
male glands:
17.5
C11orf70
ENSSSCG00000014980
ENSG00000137691
Chromosome 11 open reading frame 70
Tissue enhanced
Detected in many
choroid plexus:
29.2
kidney:
27.5
testis:
45.1
C1orf116
ENSSSCG00000032446
ENSG00000182795
Chromosome 1 open reading frame 116
Tissue enhanced
Detected in many
kidney:
35.4
mouth:
34.5
C1orf210
ENSSSCG00000003951
ENSG00000253313
Chromosome 1 open reading frame 210
Tissue enhanced
Detected in many
kidney:
64.1
liver:
43.8
stomach:
40.6
CA12
ENSSSCG00000004565
ENSG00000074410
Carbonic anhydrase 12
Tissue enhanced
Detected in many
kidney:
102.2
large intestine:
56.6
male glands:
36.5
CACNA1I
ENSSSCG00000000082
ENSG00000100346
Calcium voltage-gated channel subunit alpha1 I
Tissue enhanced
Detected in some
brain:
20.9
kidney:
16.8
CACNA2D2
ENSSSCG00000011412
ENSG00000007402
Calcium voltage-gated channel auxiliary subunit alpha2delta 2
Tissue enhanced
Detected in many
brain:
20.8
urinary bladder:
23.7
CALHM3
ENSSSCG00000034671
ENSG00000183128
Calcium homeostasis modulator 3
Tissue enhanced
Detected in some
skin:
2.9
urinary bladder:
3.0
CASR
ENSSSCG00000011878
ENSG00000036828
Extracellular calcium-sensing receptor
Tissue enhanced
Detected in all
kidney:
24.5
pituitary gland:
23.8
CCDC148
ENSSSCG00000015876
ENSG00000153237
Coiled-coil domain containing 148
Tissue enhanced
Detected in many
choroid plexus:
20.5
kidney:
20.6
CCDC198
ENSSSCG00000005067
ENSG00000100557
Coiled-coil domain containing 198
Tissue enhanced
Detected in all
kidney:
42.5
CDH3
ENSSSCG00000023162
ENSG00000062038
Cadherin 3
Tissue enhanced
Detected in many
choroid plexus:
29.6
kidney:
32.5
thyroid gland:
48.9
CDH4
ENSSSCG00000025784
ENSG00000179242
Cadherin 4
Tissue enhanced
Detected in many
brain:
20.8
kidney:
9.4
pituitary gland:
9.5
CDKL1
ENSSSCG00000034516
ENSG00000100490
Cyclin dependent kinase like 1
Tissue enhanced
Detected in all
kidney:
48.2
CEACAM16
ENSSSCG00000003081
ENSG00000213892
Carcinoembryonic antigen related cell adhesion molecule 16
Tissue enhanced
Detected in many
kidney:
16.8
CER1
ENSSSCG00000039169
ENSG00000147869
Cerberus 1, DAN family BMP antagonist
Tissue enhanced
Detected in some
choroid plexus:
7.6
kidney:
18.6
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