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Keyword
Chromosome
1
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
JAM3
ENSSSCG00000015256
ENSG00000166086
Junctional adhesion molecule 3
Tissue enhanced
Detected in all
brain:
51.8
lens:
42.1
JAML
ENSSSCG00000015089
ENSG00000160593
Junctional adhesion molecule-like precursor
Tissue enhanced
Detected in many
brain:
38.7
JAZF1
ENSSSCG00000016691
ENSG00000153814
JAZF zinc finger 1
Tissue enhanced
Detected in many
lens:
89.3
JCHAIN
ENSSSCG00000035379
ENSG00000132465
Joining chain of multimeric IgA and IgM
Tissue enhanced
Detected in many
large intestine:
159.0
small intestine:
181.6
upper respiratory system:
488.5
JMY
ENSSSCG00000014112
ENSG00000152409
Junction mediating and regulatory protein, p53 cofactor
Tissue enhanced
Detected in all
cervix:
59.5
JPH1
ENSSSCG00000006174
ENSG00000104369
Junctophilin 1
Tissue enhanced
Detected in many
choroid plexus:
37.4
skeletal muscle:
98.5
JPH3
ENSSSCG00000002653
ENSG00000154118
Junctophilin 3
Group enriched
Detected in some
brain:
36.0
mesothelial tissue:
9.7
JPH4
ENSSSCG00000002014
ENSG00000092051
Junctophilin 4
Group enriched
Detected in many
brain:
44.3
testis:
30.8
JUNB
ENSSSCG00000013735
ENSG00000171223
JunB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
synovial tissue:
110.7
KANK3
ENSSSCG00000013598
ENSG00000186994
KN motif and ankyrin repeat domains 3
Tissue enhanced
Detected in many
penis:
34.9
KANK4
ENSSSCG00000003821
ENSG00000132854
KN motif and ankyrin repeat domains 4
Tissue enriched
Detected in many
vagus nerve:
84.4
KAT2B
ENSSSCG00000024621
ENSG00000114166
Lysine acetyltransferase 2B
Tissue enhanced
Detected in all
lens:
113.6
KAT7
ENSSSCG00000017553
ENSG00000136504
Histone acetyltransferase KAT7
Tissue enhanced
Detected in all
testis:
83.4
KATNAL2
ENSSSCG00000022643
ENSG00000167216
Katanin catalytic subunit A1 like 2
Tissue enhanced
Detected in many
choroid plexus:
14.0
fallopian tube:
18.2
testis:
19.7
KATNB1
ENSSSCG00000002813
ENSG00000140854
Katanin regulatory subunit B1
Tissue enhanced
Detected in all
testis:
44.4
KAZALD1
ENSSSCG00000022429
ENSG00000107821
Kazal-type serine protease inhibitor domain-containing protein 1 precursor
Tissue enhanced
Detected in all
bone marrow:
32.0
lymphoid tissue:
34.8
KBTBD11
ENSSSCG00000029796
ENSG00000176595
Kelch repeat and BTB domain containing 11
Tissue enhanced
Detected in many
brain:
24.7
kidney:
13.9
KBTBD12
ENSSSCG00000011622
ENSG00000187715
Kelch repeat and BTB domain containing 12
Tissue enhanced
Detected in many
heart:
27.0
skeletal muscle:
24.2
KBTBD13
ENSSSCG00000035667
ENSG00000234438
Kelch repeat and BTB domain containing 13
Tissue enhanced
Detected in some
heart:
8.2
retina:
10.7
skeletal muscle:
6.6
KBTBD3
ENSSSCG00000014999
ENSG00000182359
Kelch repeat and BTB domain containing 3
Tissue enhanced
Detected in all
brain:
35.2
KCNA1
ENSSSCG00000000716
ENSG00000111262
Potassium voltage-gated channel subfamily A member 1
Group enriched
Detected in some
adrenal gland:
64.8
brain:
42.6
KCNA10
ENSSSCG00000006803
ENSG00000143105
Potassium voltage-gated channel subfamily A member 10
Tissue enhanced
Detected in single
brain:
2.1
KCNA2
ENSSSCG00000037709
ENSG00000177301
Potassium voltage-gated channel subfamily A member 2
Tissue enhanced
Detected in some
brain:
39.7
choroid plexus:
13.6
retina:
7.8
KCNA4
ENSSSCG00000013330
ENSG00000182255
Potassium voltage-gated channel subfamily A member 4
Group enriched
Detected in some
adrenal gland:
13.7
brain:
30.8
KCNA5
ENSSSCG00000021596
ENSG00000130037
Potassium voltage-gated channel subfamily A member 5
Tissue enhanced
Detected in many
cornea:
25.9
penis:
23.6
KCNA6
ENSSSCG00000000717
ENSG00000151079
Potassium voltage-gated channel subfamily A member 6
Tissue enriched
Detected in some
brain:
63.3
KCNA7
ENSSSCG00000003159
ENSG00000104848
Potassium voltage-gated channel subfamily A member 7
Tissue enriched
Detected in some
skeletal muscle:
38.1
KCNAB1
ENSSSCG00000025810
ENSG00000169282
Voltage-gated potassium channel subunit beta-1
Tissue enhanced
Detected in all
brain:
41.0
lens:
31.0
pineal gland:
32.8
KCNAB2
ENSSSCG00000020749
ENSG00000069424
Potassium voltage-gated channel subfamily A regulatory beta subunit 2
Group enriched
Detected in many
brain:
55.2
retina:
14.5
KCNAB3
ENSSSCG00000037973
ENSG00000170049
Potassium voltage-gated channel subfamily A regulatory beta subunit 3
Tissue enhanced
Detected in all
brain:
22.0
KCNB1
ENSSSCG00000007462
ENSG00000158445
Potassium voltage-gated channel subfamily B member 1
Tissue enriched
Detected in many
retina:
78.5
KCNB2
ENSSSCG00000006185
ENSG00000182674
Potassium voltage-gated channel subfamily B member 2
Tissue enhanced
Detected in some
brain:
16.8
pineal gland:
23.1
retina:
32.8
KCNC1
ENSSSCG00000013374
ENSG00000129159
Potassium voltage-gated channel subfamily C member 1
Group enriched
Detected in many
brain:
46.6
retina:
12.5
KCNC2
ENSSSCG00000000516
ENSG00000166006
Potassium voltage-gated channel subfamily C member 2
Tissue enhanced
Detected in many
brain:
34.0
KCNC3
ENSSSCG00000003214
ENSG00000131398
Potassium voltage-gated channel subfamily C member 3
Group enriched
Detected in many
brain:
35.1
retina:
10.2
KCNC4
ENSSSCG00000006810
ENSG00000116396
Potassium voltage-gated channel subfamily C member 4
Tissue enhanced
Detected in many
adrenal gland:
17.9
brain:
25.4
skeletal muscle:
22.0
KCND2
ENSSSCG00000016621
ENSG00000184408
Potassium voltage-gated channel subfamily D member 2
Tissue enriched
Detected in many
brain:
79.7
KCND3
ENSSSCG00000026680
ENSG00000171385
Potassium voltage-gated channel subfamily D member 3
Tissue enhanced
Detected in many
brain:
26.8
KCNE2
ENSSSCG00000012045
ENSG00000159197
Potassium voltage-gated channel subfamily E regulatory subunit 2
Tissue enhanced
Detected in many
choroid plexus:
9.4
ductus deferens:
12.5
endometrium:
10.8
stomach:
7.0
KCNE3
ENSSSCG00000029323
ENSG00000175538
Potassium voltage-gated channel subfamily E member 3
Tissue enhanced
Detected in many
thyroid gland:
44.7
upper respiratory system:
39.4
KCNE5
ENSSSCG00000037581
ENSG00000176076
Potassium voltage-gated channel subfamily E regulatory subunit 5
Group enriched
Detected in some
brain:
23.8
lung:
30.1
pineal gland:
11.5
KCNF1
ENSSSCG00000033463
ENSG00000162975
Potassium voltage-gated channel modifier subfamily F member 1
Group enriched
Detected in some
adrenal gland:
31.6
brain:
39.0
KCNG1
ENSSSCG00000007476
ENSG00000026559
Potassium voltage-gated channel subfamily G member 1
Tissue enhanced
Detected in all
brain:
19.5
cervix:
16.8
endometrium:
20.6
KCNG2
ENSSSCG00000005780
ENSG00000178342
Potassium voltage-gated channel modifier subfamily G member 2
Tissue enriched
Detected in many
brain:
28.3
KCNG3
ENSSSCG00000008465
ENSG00000171126
Potassium voltage-gated channel modifier subfamily G member 3
Tissue enhanced
Detected in many
cornea:
10.3
epididymis:
18.7
male glands:
20.1
KCNG4
ENSSSCG00000030446
ENSG00000168418
Potassium voltage-gated channel modifier subfamily G member 4
Group enriched
Detected in some
brain:
7.1
pineal gland:
12.8
retina:
15.8
KCNH2
ENSSSCG00000016448
ENSG00000055118
Potassium voltage-gated channel subfamily H member 2
Tissue enhanced
Detected in many
heart:
30.8
KCNH3
ENSSSCG00000000203
ENSG00000135519
Potassium voltage-gated channel subfamily H member 3
Tissue enriched
Detected in some
brain:
29.4
KCNH5
ENSSSCG00000034726
ENSG00000140015
Potassium voltage-gated channel subfamily H member 5
Group enriched
Detected in some
brain:
29.4
pineal gland:
8.4
retina:
22.2
KCNH6
ENSSSCG00000017295
ENSG00000173826
Potassium voltage-gated channel subfamily H member 6
Group enriched
Detected in some
pineal gland:
26.6
retina:
14.0
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