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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ISLR2
ENSSSCG00000036011
ENSG00000167178
Immunoglobulin superfamily containing leucine rich repeat 2
Tissue enhanced
Detected in many
brain:
18.8
mesothelial tissue:
13.3
vagus nerve:
15.9
ISM1
ENSSSCG00000007073
ENSG00000101230
Isthmin 1
Tissue enhanced
Detected in many
cartilage:
84.7
ISOC1
ENSSSCG00000014258
ENSG00000066583
Isochorismatase domain containing 1
Tissue enhanced
Detected in all
male glands:
35.7
ISPD
ENSSSCG00000015358
ENSG00000214960
Isoprenoid synthase domain containing
Tissue enhanced
Detected in all
choroid plexus:
28.9
ISX
ENSSSCG00000040934
ENSG00000175329
Intestine specific homeobox
Group enriched
Detected in some
large intestine:
42.2
small intestine:
19.2
ISYNA1
ENSSSCG00000040524
ENSG00000105655
Inositol-3-phosphate synthase 1
Tissue enhanced
Detected in many
choroid plexus:
135.7
testis:
64.6
ITGA1
ENSSSCG00000016885
ENSG00000213949
Integrin subunit alpha 1
Tissue enhanced
Detected in many
cartilage:
56.4
smooth muscle:
85.1
ITGA10
ENSSSCG00000006687
ENSG00000143127
Integrin subunit alpha 10
Tissue enriched
Detected in all
cartilage:
55.2
ITGA11
ENSSSCG00000004961
ENSG00000137809
Integrin subunit alpha 11
Tissue enhanced
Detected in many
dura mater:
26.8
ITGA4
ENSSSCG00000016009
ENSG00000115232
Integrin subunit alpha 4
Tissue enriched
Detected in many
lymphoid tissue:
63.2
ITGA5
ENSSSCG00000000293
ENSG00000161638
Integrin subunit alpha 5
Tissue enhanced
Detected in many
ovary:
54.9
ITGA7
ENSSSCG00000036237
ENSG00000135424
Integrin subunit alpha 7
Tissue enhanced
Detected in many
adipose tissue:
76.7
ITGA8
ENSSSCG00000011046
ENSG00000077943
Integrin subunit alpha 8
Tissue enhanced
Detected in many
cervix:
61.7
endometrium:
34.7
fallopian tube:
40.9
ITGA9
ENSSSCG00000011245
ENSG00000144668
Integrin subunit alpha 9
Tissue enhanced
Detected in many
liver:
66.6
lymphoid tissue:
63.5
ITGAE
ENSSSCG00000017869
ENSG00000083457
Integrin subunit alpha E
Tissue enhanced
Detected in many
lens:
57.9
lymphoid tissue:
25.9
ITGAL
ENSSSCG00000007797
ENSG00000005844
Integrin alpha-L precursor
Tissue enhanced
Detected in many
lymphoid tissue:
49.4
stomach:
27.1
ITGAV
ENSSSCG00000016027
ENSG00000138448
Integrin alpha-V precursor
Tissue enhanced
Detected in all
ovary:
65.8
ITGAX
ENSSSCG00000007754
ENSG00000140678
Integrin subunit alpha X
Tissue enhanced
Detected in all
lymphoid tissue:
83.4
ITGB1BP2
ENSSSCG00000022209
ENSG00000147166
Integrin beta-1-binding protein 2
Group enriched
Detected in many
heart:
33.1
skeletal muscle:
27.7
smooth muscle:
20.9
ITGB2
ENSSSCG00000025133
ENSG00000160255
Integrin beta-2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
71.8
ITGB3
ENSSSCG00000017306
ENSG00000259207
Integrin beta-3 precursor
Tissue enhanced
Detected in all
dura mater:
31.3
ovary:
30.1
ITGB4
ENSSSCG00000017204
ENSG00000132470
Integrin subunit beta 4
Tissue enhanced
Detected in many
vagus nerve:
116.2
ITGB6
ENSSSCG00000015886
ENSG00000115221
Integrin beta-6 precursor
Tissue enhanced
Detected in many
epididymis:
22.6
heart:
30.6
skeletal muscle:
26.4
ITGB7
ENSSSCG00000000257
ENSG00000139626
Integrin subunit beta 7
Tissue enhanced
Detected in many
lymphoid tissue:
36.0
stomach:
32.9
ITGB8
ENSSSCG00000015375
ENSG00000105855
Integrin beta-8 precursor
Tissue enhanced
Detected in many
brain:
49.6
vagus nerve:
60.5
ITGBL1
ENSSSCG00000009526
ENSG00000198542
Integrin subunit beta like 1
Tissue enhanced
Detected in many
aorta:
29.7
cornea:
42.0
dura mater:
31.8
vagus nerve:
32.9
ITIH1
ENSSSCG00000011450
ENSG00000055957
Inter-alpha-trypsin inhibitor heavy chain 1
Tissue enriched
Detected in all
liver:
234.9
ITIH2
ENSSSCG00000011128
ENSG00000151655
Inter-alpha-trypsin inhibitor heavy chain H2 precursor
Tissue enriched
Detected in some
liver:
217.5
ITIH3
ENSSSCG00000011451
ENSG00000162267
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
Tissue enriched
Detected in many
liver:
105.3
ITIH4
ENSSSCG00000011453
ENSG00000055955
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
Tissue enhanced
Detected in many
cervix:
61.4
liver:
161.3
ITK
ENSSSCG00000038003
ENSG00000113263
IL2 inducible T cell kinase
Tissue enriched
Detected in many
lymphoid tissue:
43.4
ITM2B
ENSSSCG00000009403
ENSG00000136156
Integral membrane protein 2B
Tissue enriched
Detected in all
epididymis:
329.8
ITPK1
ENSSSCG00000002457
ENSG00000100605
Inositol-tetrakisphosphate 1-kinase
Tissue enhanced
Detected in all
stomach:
81.1
ITPKA
ENSSSCG00000004746
ENSG00000137825
Inositol-trisphosphate 3-kinase A
Tissue enhanced
Detected in many
brain:
24.6
stomach:
22.0
ITPR1
ENSSSCG00000023437
ENSG00000150995
Inositol 1,4,5-trisphosphate receptor type 1
Tissue enhanced
Detected in all
cervix:
67.1
ITPR3
ENSSSCG00000001518
ENSG00000096433
Inositol 1,4,5-trisphosphate receptor type 3
Tissue enhanced
Detected in many
stomach:
78.1
ITPRIP
ENSSSCG00000010613
ENSG00000148841
Inositol 1,4,5-trisphosphate receptor interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
39.1
IVD
ENSSSCG00000004774
ENSG00000128928
Isovaleryl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
76.3
IVL
ENSSSCG00000006595
ENSG00000163207
Involucrin
Group enriched
Detected in some
mouth:
120.0
skin:
90.2
IVNS1ABP
ENSSSCG00000015570
ENSG00000116679
Influenza virus NS1A-binding protein
Tissue enhanced
Detected in all
cartilage:
83.1
heart:
87.1
lens:
148.0
IYD
ENSSSCG00000004093
ENSG00000009765
Iodotyrosine deiodinase 1 precursor
Tissue enriched
Detected in many
thyroid gland:
295.1
IZUMO1
ENSSSCG00000003142
ENSG00000182264
Izumo sperm-egg fusion 1
Tissue enhanced
Detected in many
testis:
24.2
IZUMO2
ENSSSCG00000003207
ENSG00000161652
IZUMO family member 2
Tissue enhanced
Detected in many
testis:
28.4
IZUMO3
ENSSSCG00000005129
ENSG00000205442
IZUMO family member 3
Tissue enriched
Detected in single
testis:
37.5
IZUMO4
ENSSSCG00000013455
ENSG00000099840
IZUMO family member 4
Tissue enriched
Detected in many
testis:
165.6
JAK3
ENSSSCG00000013888
ENSG00000105639
Janus kinase 3
Tissue enhanced
Detected in many
lymphoid tissue:
34.3
JAKMIP1
ENSSSCG00000008710
ENSG00000152969
Janus kinase and microtubule interacting protein 1
Tissue enhanced
Detected in many
brain:
21.1
stomach:
12.5
JAKMIP2
ENSSSCG00000014420
ENSG00000176049
Janus kinase and microtubule interacting protein 2
Tissue enhanced
Detected in some
brain:
19.6
cartilage:
9.9
pineal gland:
10.1
pituitary gland:
7.9
JAKMIP3
ENSSSCG00000024633
ENSG00000188385
Janus kinase and microtubule interacting protein 3
Tissue enriched
Detected in many
brain:
19.2
JAM2
ENSSSCG00000023028
ENSG00000154721
Junctional adhesion molecule 2
Tissue enhanced
Detected in all
brain:
42.6
dura mater:
46.8
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