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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GRIP2
ENSSSCG00000011599
ENSG00000144596
Glutamate receptor interacting protein 2
Tissue enhanced
Detected in many
adrenal gland:
23.1
brain:
20.1
skeletal muscle:
16.7
GRK1
ENSSSCG00000009562
ENSG00000185974
G protein-coupled receptor kinase 1
Tissue enriched
Detected in some
retina:
73.2
GRK3
ENSSSCG00000009956
ENSG00000100077
G protein-coupled receptor kinase 3
Tissue enhanced
Detected in all
lymphoid tissue:
61.3
GRK4
ENSSSCG00000008694
ENSG00000125388
G protein-coupled receptor kinase 4
Tissue enriched
Detected in many
testis:
73.1
GRK5
ENSSSCG00000010683
ENSG00000198873
G protein-coupled receptor kinase 5
Tissue enriched
Detected in many
cartilage:
92.6
GRK6
ENSSSCG00000035028
ENSG00000198055
G protein-coupled receptor kinase 6
Tissue enriched
Detected in all
lens:
136.1
GRK7
ENSSSCG00000011675
ENSG00000114124
Rhodopsin kinase
Tissue enriched
Detected in some
retina:
39.3
GRM1
ENSSSCG00000004119
ENSG00000152822
Glutamate metabotropic receptor 1
Tissue enriched
Detected in some
brain:
33.4
GRM2
ENSSSCG00000011423
ENSG00000164082
Glutamate metabotropic receptor 2
Tissue enhanced
Detected in all
brain:
18.2
GRM3
ENSSSCG00000015395
ENSG00000198822
Glutamate metabotropic receptor 3
Tissue enriched
Detected in some
brain:
25.4
GRM4
ENSSSCG00000001523
ENSG00000124493
Glutamate metabotropic receptor 4
Tissue enriched
Detected in some
brain:
76.1
GRM5
ENSSSCG00000029865
ENSG00000168959
Glutamate metabotropic receptor 5
Tissue enriched
Detected in some
brain:
27.7
GRM6
ENSSSCG00000014027
ENSG00000113262
Glutamate metabotropic receptor 6
Group enriched
Detected in some
pineal gland:
16.7
retina:
44.2
GRM7
ENSSSCG00000023891
ENSG00000196277
Glutamate metabotropic receptor 7
Tissue enhanced
Detected in all
brain:
19.8
pineal gland:
48.5
GRM8
ENSSSCG00000022865
ENSG00000179603
Glutamate metabotropic receptor 8
Group enriched
Detected in some
brain:
15.3
choroid plexus:
5.3
penis:
17.2
retina:
8.6
GRP
ENSSSCG00000037300
ENSG00000134443
Gastrin releasing peptide
Group enriched
Detected in some
brain:
22.7
cornea:
33.4
GRTP1
ENSSSCG00000009554
ENSG00000139835
Growth hormone regulated TBC protein 1
Tissue enhanced
Detected in many
stomach:
40.1
GRXCR1
ENSSSCG00000008804
ENSG00000215203
Glutaredoxin and cysteine rich domain containing 1
Tissue enriched
Detected in many
testis:
29.6
GSC
ENSSSCG00000002490
ENSG00000133937
Goosecoid homeobox
Tissue enhanced
Detected in some
adipose tissue:
13.4
aorta:
8.0
mesothelial tissue:
14.0
mouth:
8.2
upper respiratory system:
14.1
GSDMA
ENSSSCG00000017490
ENSG00000167914
Gasdermin A
Tissue enriched
Detected in some
skin:
39.3
GSDME
ENSSSCG00000016716
ENSG00000105928
Gasdermin E
Tissue enhanced
Detected in many
choroid plexus:
22.5
GSE1
ENSSSCG00000002664
ENSG00000131149
Gse1 coiled-coil protein
Tissue enhanced
Detected in all
lymphoid tissue:
79.7
GSG1
ENSSSCG00000039316
ENSG00000111305
Germ cell associated 1
Tissue enriched
Detected in some
testis:
187.0
GSN
ENSSSCG00000037508
ENSG00000148180
Gelsolin
Tissue enhanced
Detected in all
cartilage:
266.2
heart:
223.1
penis:
327.1
GSPT1
ENSSSCG00000021118
ENSG00000103342
G1 to S phase transition 1
Tissue enhanced
Detected in all
lens:
116.6
GSR
ENSSSCG00000015844
ENSG00000104687
Glutathione-disulfide reductase
Tissue enhanced
Detected in all
large intestine:
60.8
GSS
ENSSSCG00000007287
ENSG00000100983
Glutathione synthetase
Tissue enriched
Detected in all
lens:
109.2
GSTA1
ENSSSCG00000002623
ENSG00000182793,ENSG00000243955,ENSG00000244067
Tissue enhanced
Detected in many
liver:
176.9
male glands:
65.1
ovary:
103.3
small intestine:
67.1
GSTA4
ENSSSCG00000002627
ENSG00000170899
Glutathione S-transferase A4
Tissue enhanced
Detected in many
brain:
43.4
lens:
47.1
pineal gland:
36.6
GSTM3
ENSSSCG00000006821
ENSG00000134202
Glutathione S-transferase Mu 3
Tissue enriched
Detected in some
testis:
140.1
GSTO1
ENSSSCG00000022351
ENSG00000148834
Glutathione S-transferase omega-1
Tissue enhanced
Detected in many
adrenal gland:
43.6
liver:
46.3
GSTO2
ENSSSCG00000030271
ENSG00000065621
Glutathione S-transferase omega 2
Tissue enhanced
Detected in all
lymphoid tissue:
22.8
testis:
20.8
GSTP1
ENSSSCG00000032003
ENSG00000084207
Glutathione S-transferase pi 1
Tissue enhanced
Detected in all
lens:
170.7
GSTT4
ENSSSCG00000010065
ENSG00000276950
Glutathione S-transferase theta 4
Group enriched
Detected in some
liver:
17.7
testis:
28.2
GSTZ1
ENSSSCG00000002396
ENSG00000100577
Maleylacetoacetate isomerase
Tissue enhanced
Detected in all
liver:
86.1
GSX1
ENSSSCG00000009313
ENSG00000169840
GS homeobox 1
Group enriched
Detected in some
brain:
3.3
gallbladder:
2.2
mesothelial tissue:
2.2
small intestine:
3.1
stomach:
1.8
GSX2
ENSSSCG00000008840
ENSG00000180613
GS homeobox 2
Tissue enriched
Detected in some
lymphoid tissue:
21.0
GTSE1
ENSSSCG00000000002
ENSG00000075218
G2 and S-phase expressed 1
Tissue enhanced
Detected in many
heart:
21.5
lymphoid tissue:
14.2
GTSF1
ENSSSCG00000026333
ENSG00000170627
Gametocyte specific factor 1
Tissue enriched
Detected in some
testis:
66.3
GUCA1A
ENSSSCG00000001636
ENSG00000048545
Guanylate cyclase activator 1A
Tissue enriched
Detected in some
retina:
88.0
GUCA1B
ENSSSCG00000001637
ENSG00000112599
Guanylate cyclase activator 1B
Tissue enriched
Detected in some
retina:
65.9
GUCA2A
ENSSSCG00000003969
ENSG00000197273
Guanylin
Group enriched
Detected in some
large intestine:
187.3
small intestine:
89.4
GUCA2B
ENSSSCG00000003970
ENSG00000044012
Guanylate cyclase activator 2B Uroguanylin
Group enriched
Detected in some
large intestine:
161.2
small intestine:
58.5
GUCD1
ENSSSCG00000010059
ENSG00000138867
Protein GUCD1
Tissue enhanced
Detected in all
stomach:
53.6
GUCY1A2
ENSSSCG00000024613
ENSG00000152402
Guanylate cyclase 1 soluble subunit alpha 2
Tissue enhanced
Detected in many
brain:
28.2
lymphoid tissue:
27.3
GUCY1B1
ENSSSCG00000008870
ENSG00000061918
Guanylate cyclase soluble subunit beta-1
Tissue enhanced
Detected in many
pineal gland:
40.0
GUCY2D
ENSSSCG00000025345
ENSG00000132518
Guanylate cyclase 2D, retinal
Tissue enriched
Detected in some
retina:
64.3
GUCY2F
ENSSSCG00000012580
ENSG00000101890
Guanylate cyclase 2F, retinal
Group enriched
Detected in some
choroid plexus:
7.2
pituitary gland:
5.9
GULP1
ENSSSCG00000016033
ENSG00000144366
GULP, engulfment adaptor PTB domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
95.7
GUSB
ENSSSCG00000007739
ENSG00000169919
Beta-glucuronidase precursor
Tissue enhanced
Detected in all
ovary:
55.6
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