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1
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GPRC5A
ENSSSCG00000029592
ENSG00000013588
G protein-coupled receptor class C group 5 member A
Tissue enhanced
Detected in many
cartilage:
35.0
large intestine:
51.4
lung:
52.1
synovial tissue:
47.7
GPRC5B
ENSSSCG00000007864
ENSG00000167191
G protein-coupled receptor class C group 5 member B
Tissue enhanced
Detected in all
brain:
75.1
lens:
84.2
ovary:
63.1
GPRC5C
ENSSSCG00000040989
ENSG00000170412
G protein-coupled receptor class C group 5 member C
Tissue enhanced
Detected in all
stomach:
56.2
GPRC5D
ENSSSCG00000029545
ENSG00000111291
G protein-coupled receptor class C group 5 member D
Tissue enriched
Detected in many
skin:
68.9
GPRIN1
ENSSSCG00000014054
ENSG00000169258
G protein regulated inducer of neurite outgrowth 1
Group enriched
Detected in many
brain:
36.5
pituitary gland:
9.1
GPRIN3
ENSSSCG00000039821
ENSG00000185477
GPRIN family member 3
Tissue enhanced
Detected in many
brain:
34.2
lymphoid tissue:
35.7
pineal gland:
34.6
GPRL15
ENSSSCG00000024634
ENSG00000188373
Protein GPR15L
Tissue enhanced
Detected in some
large intestine:
118.4
lymphoid tissue:
26.5
salivary gland:
27.7
upper respiratory system:
37.9
GPSM1
ENSSSCG00000039487
ENSG00000160360
G protein signaling modulator 1
Tissue enhanced
Detected in all
brain:
35.1
GPSM2
ENSSSCG00000021440
ENSG00000121957
G protein signaling modulator 2
Tissue enhanced
Detected in all
brain:
32.4
GPSM3
ENSSSCG00000001439
ENSG00000213654
G-protein-signaling modulator 3
Tissue enhanced
Detected in many
lymphoid tissue:
77.1
GPT2
ENSSSCG00000002847
ENSG00000166123
Glutamic--pyruvic transaminase 2
Tissue enhanced
Detected in many
brain:
43.4
kidney:
59.2
liver:
39.4
GPX2
ENSSSCG00000002279
ENSG00000176153
Glutathione peroxidase 2
Group enriched
Detected in some
large intestine:
226.7
upper respiratory system:
96.9
GPX3
ENSSSCG00000036438
ENSG00000211445
Glutathione peroxidase 3 precursor
Group enriched
Detected in many
kidney:
521.1
ovary:
496.9
GPX4
ENSSSCG00000024052
ENSG00000167468
Phospholipid hydroperoxide glutathione peroxidase, mitochondrial
Tissue enhanced
Detected in all
lens:
91.2
testis:
112.1
GPX5
ENSSSCG00000001214
ENSG00000224586
Epididymal secretory glutathione peroxidase
Tissue enriched
Detected in many
epididymis:
80.6
GPX6
ENSSSCG00000001213
ENSG00000198704
Glutathione peroxidase 6 precursor
Tissue enriched
Detected in some
male glands:
109.1
GPX8
ENSSSCG00000021973
ENSG00000164294
Glutathione peroxidase 8 (putative)
Tissue enhanced
Detected in many
male glands:
42.8
ovary:
33.4
GRAMD1B
ENSSSCG00000015144
ENSG00000023171
GRAM domain containing 1B
Tissue enhanced
Detected in many
adrenal gland:
111.6
kidney:
48.9
ovary:
43.4
GRAMD4
ENSSSCG00000031441
ENSG00000075240
GRAM domain containing 4
Tissue enhanced
Detected in all
stomach:
35.1
GRAP2
ENSSSCG00000000080
ENSG00000100351
GRB2-related adaptor protein 2
Tissue enhanced
Detected in all
lymphoid tissue:
44.2
GRB14
ENSSSCG00000015901
ENSG00000115290
Growth factor receptor bound protein 14
Tissue enhanced
Detected in many
adrenal gland:
78.9
liver:
34.4
testis:
29.8
GREB1
ENSSSCG00000025483
ENSG00000196208
Growth regulation by estrogen in breast cancer 1
Tissue enhanced
Detected in many
epididymis:
21.3
ovary:
20.1
penis:
28.8
GREB1L
ENSSSCG00000003699
ENSG00000141449
Growth regulation by estrogen in breast cancer 1 like
Tissue enhanced
Detected in many
ductus deferens:
37.3
epididymis:
62.0
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GREM2
ENSSSCG00000023289
ENSG00000180875
Gremlin 2, DAN family BMP antagonist
Tissue enhanced
Detected in some
penis:
10.8
skin:
13.5
vagus nerve:
11.6
GRHL1
ENSSSCG00000026068
ENSG00000134317
Grainyhead like transcription factor 1
Tissue enhanced
Detected in many
mouth:
24.3
salivary gland:
28.2
skin:
42.7
GRHL2
ENSSSCG00000006060
ENSG00000083307
Grainyhead like transcription factor 2
Tissue enhanced
Detected in many
male glands:
51.1
GRHL3
ENSSSCG00000003539
ENSG00000158055
Grainyhead like transcription factor 3
Tissue enhanced
Detected in many
mouth:
38.4
urinary bladder:
24.1
GRHPR
ENSSSCG00000005349
ENSG00000137106
Glyoxylate and hydroxypyruvate reductase
Tissue enhanced
Detected in all
liver:
60.7
GRIA1
ENSSSCG00000022569
ENSG00000155511
Glutamate ionotropic receptor AMPA type subunit 1
Tissue enriched
Detected in some
brain:
64.7
GRIA2
ENSSSCG00000024685
ENSG00000120251
Glutamate ionotropic receptor AMPA type subunit 2
Tissue enriched
Detected in some
brain:
47.1
GRIA3
ENSSSCG00000012638
ENSG00000125675
Glutamate ionotropic receptor AMPA type subunit 3
Tissue enhanced
Detected in many
adrenal gland:
19.6
brain:
27.5
ovary:
13.7
pineal gland:
18.6
GRIA4
ENSSSCG00000030565
ENSG00000152578
Glutamate ionotropic receptor AMPA type subunit 4
Tissue enhanced
Detected in many
brain:
46.4
epididymis:
33.5
retina:
20.2
GRID1
ENSSSCG00000010352
ENSG00000182771
Glutamate ionotropic receptor delta type subunit 1
Tissue enhanced
Detected in many
brain:
17.9
pineal gland:
9.9
GRID2
ENSSSCG00000009197
ENSG00000152208
Glutamate ionotropic receptor delta type subunit 2
Tissue enhanced
Detected in many
brain:
52.2
thyroid gland:
15.3
GRID2IP
ENSSSCG00000037070
ENSG00000215045
Grid2 interacting protein
Tissue enriched
Detected in some
brain:
17.9
GRIFIN
ENSSSCG00000007569
ENSG00000275572
Grifin
Tissue enriched
Detected in some
lens:
1138.2
GRIK1
ENSSSCG00000025119
ENSG00000171189
Glutamate ionotropic receptor kainate type subunit 1
Tissue enhanced
Detected in some
choroid plexus:
62.6
pineal gland:
14.6
retina:
21.9
GRIK2
ENSSSCG00000004361
ENSG00000164418
Glutamate ionotropic receptor kainate type subunit 2
Group enriched
Detected in some
brain:
54.3
thyroid gland:
43.1
vagus nerve:
21.4
GRIK3
ENSSSCG00000003640
ENSG00000163873
Glutamate ionotropic receptor kainate type subunit 3
Tissue enhanced
Detected in many
brain:
25.7
ductus deferens:
13.2
vagus nerve:
30.2
GRIK4
ENSSSCG00000015131
ENSG00000149403
Glutamate ionotropic receptor kainate type subunit 4
Tissue enhanced
Detected in many
brain:
16.4
male glands:
15.3
GRIK5
ENSSSCG00000003038
ENSG00000105737
Glutamate ionotropic receptor kainate type subunit 5
Tissue enhanced
Detected in many
testis:
30.5
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
GRIN2A
ENSSSCG00000031290
ENSG00000183454
Glutamate ionotropic receptor NMDA type subunit 2A
Tissue enriched
Detected in some
brain:
33.0
GRIN2B
ENSSSCG00000000614
ENSG00000273079
Glutamate ionotropic receptor NMDA type subunit 2B
Tissue enriched
Detected in some
brain:
35.0
GRIN2C
ENSSSCG00000023151
ENSG00000161509
Glutamate ionotropic receptor NMDA type subunit 2C
Group enriched
Detected in some
brain:
31.0
male glands:
35.5
GRIN2D
ENSSSCG00000003133
ENSG00000105464
Glutamate ionotropic receptor NMDA type subunit 2D
Tissue enhanced
Detected in some
brain:
10.5
GRIN3A
ENSSSCG00000005400
ENSG00000198785
Glutamate ionotropic receptor NMDA type subunit 3A
Tissue enhanced
Detected in many
brain:
13.1
GRIN3B
ENSSSCG00000029635
ENSG00000116032
Glutamate ionotropic receptor NMDA type subunit 3B
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.2
GRINA
ENSSSCG00000032796
ENSG00000178719
Glutamate ionotropic receptor NMDA type subunit associated protein 1
Tissue enhanced
Detected in all
testis:
99.3
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