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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
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Lung
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Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EFR3B
ENSSSCG00000022933
ENSG00000084710
EFR3 homolog B
Tissue enhanced
Detected in many
brain:
38.1
vagus nerve:
13.4
EFTUD2
ENSSSCG00000017346
ENSG00000108883
Elongation factor Tu GTP binding domain containing 2
Tissue enhanced
Detected in all
cornea:
73.5
lens:
69.9
EGF
ENSSSCG00000009134
ENSG00000138798
Pro-epidermal growth factor precursor
Tissue enhanced
Detected in many
choroid plexus:
46.4
kidney:
90.0
male glands:
52.2
salivary gland:
32.6
EGFL6
ENSSSCG00000012121
ENSG00000198759
EGF like domain multiple 6
Tissue enhanced
Detected in many
cornea:
16.4
dura mater:
21.7
pituitary gland:
25.4
upper respiratory system:
14.7
EGFL8
ENSSSCG00000001434
ENSG00000241404
Epidermal growth factor-like protein 8
Tissue enhanced
Detected in all
stomach:
44.4
vagus nerve:
78.8
EGFLAM
ENSSSCG00000016848
ENSG00000164318
EGF like, fibronectin type III and laminin G domains
Tissue enhanced
Detected in many
mesothelial tissue:
40.6
retina:
39.6
EGFR
ENSSSCG00000022126
ENSG00000146648
Epidermal growth factor receptor precursor
Tissue enhanced
Detected in many
male glands:
80.6
EGLN2
ENSSSCG00000002995
ENSG00000269858
Egl-9 family hypoxia inducible factor 2
Tissue enhanced
Detected in all
testis:
84.3
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
EGR1
ENSSSCG00000014336
ENSG00000120738
Early growth response 1
Tissue enhanced
Detected in many
synovial tissue:
149.2
EGR2
ENSSSCG00000010224
ENSG00000122877
E3 SUMO-protein ligase EGR2
Tissue enhanced
Detected in many
epididymis:
35.7
synovial tissue:
43.8
vagus nerve:
64.5
EGR3
ENSSSCG00000009630
ENSG00000179388
Early growth response 3
Tissue enhanced
Detected in many
synovial tissue:
55.2
EGR4
ENSSSCG00000036364
ENSG00000135625
Early growth response protein 4
Tissue enhanced
Detected in many
brain:
16.1
ovary:
17.4
EHD2
ENSSSCG00000023371
ENSG00000024422
EH domain containing 2
Tissue enhanced
Detected in many
adipose tissue:
96.4
EHD3
ENSSSCG00000035987
ENSG00000013016
EH domain containing 3
Tissue enhanced
Detected in many
adrenal gland:
26.4
lens:
31.8
lymphoid tissue:
22.8
EHD4
ENSSSCG00000020666
ENSG00000103966
EH domain containing 4
Tissue enhanced
Detected in many
heart:
46.2
EHF
ENSSSCG00000013300
ENSG00000135373
ETS homologous factor
Tissue enhanced
Detected in many
male glands:
88.9
salivary gland:
88.8
upper respiratory system:
80.8
EHHADH
ENSSSCG00000040296
ENSG00000113790
Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase
Group enriched
Detected in all
kidney:
52.9
liver:
89.3
EIF1B
ENSSSCG00000011270
ENSG00000114784
Eukaryotic translation initiation factor 1b
Tissue enhanced
Detected in all
brain:
64.6
lens:
86.7
EIF2AK3
ENSSSCG00000008208
ENSG00000172071
Eukaryotic translation initiation factor 2 alpha kinase 3
Tissue enhanced
Detected in all
male glands:
53.2
EIF2S1
ENSSSCG00000033295
ENSG00000134001
Eukaryotic translation initiation factor 2 subunit alpha
Tissue enhanced
Detected in all
lens:
42.8
EIF4E1B
ENSSSCG00000014052
ENSG00000175766
Eukaryotic translation initiation factor 4E family member 1B
Tissue enhanced
Detected in many
cartilage:
6.7
salivary gland:
10.2
EIF4E3
ENSSSCG00000011516
ENSG00000163412
Eukaryotic translation initiation factor 4E family member 3
Tissue enhanced
Detected in all
brain:
53.5
EIF4EBP3
ENSSSCG00000020835
ENSG00000243056
Eukaryotic translation initiation factor 4E-binding protein 3
Tissue enriched
Detected in all
male glands:
143.5
EIF5A2
ENSSSCG00000040946
ENSG00000163577
Eukaryotic translation initiation factor 5A2
Tissue enhanced
Detected in many
brain:
21.4
ELANE
ENSSSCG00000029130
ENSG00000197561
Elastase, neutrophil expressed
Tissue enriched
Detected in many
bone marrow:
70.9
ELAVL2
ENSSSCG00000005130
ENSG00000107105
ELAV like RNA binding protein 2
Group enriched
Detected in some
brain:
36.2
large intestine:
11.5
retina:
9.4
testis:
13.6
ELAVL3
ENSSSCG00000013617
ENSG00000196361
ELAV like RNA binding protein 3
Tissue enriched
Detected in some
brain:
43.3
ELAVL4
ENSSSCG00000037291
ENSG00000162374
ELAV like RNA binding protein 4
Tissue enriched
Detected in some
brain:
31.8
ELF3
ENSSSCG00000010922
ENSG00000163435
E74 like ETS transcription factor 3
Tissue enhanced
Detected in many
large intestine:
35.4
stomach:
54.7
upper respiratory system:
50.1
urinary bladder:
61.1
ELF4
ENSSSCG00000012656
ENSG00000102034
E74 like ETS transcription factor 4
Tissue enhanced
Detected in many
stomach:
41.7
ELF5
ENSSSCG00000013301
ENSG00000135374
ETS-related transcription factor Elf-5
Tissue enriched
Detected in all
male glands:
114.9
ELFN1
ENSSSCG00000030485
ENSG00000225968
Extracellular leucine rich repeat and fibronectin type III domain containing 1
Group enriched
Detected in some
brain:
7.6
retina:
22.1
testis:
10.9
ELFN2
ENSSSCG00000000131
ENSG00000166897
Extracellular leucine rich repeat and fibronectin type III domain containing 2
Tissue enhanced
Detected in some
brain:
32.5
retina:
8.5
ELL2
ENSSSCG00000014168
ENSG00000118985
Elongation factor for RNA polymerase II 2
Tissue enhanced
Detected in all
lens:
121.3
ELL3
ENSSSCG00000004699
ENSG00000128886
Elongation factor for RNA polymerase II 3
Tissue enhanced
Detected in many
lymphoid tissue:
52.8
upper respiratory system:
22.4
ELMO3
ENSSSCG00000002786
ENSG00000102890
Engulfment and cell motility 3
Tissue enhanced
Detected in many
male glands:
48.7
ELMOD1
ENSSSCG00000015002
ENSG00000110675
ELMO domain containing 1
Tissue enhanced
Detected in some
brain:
68.9
pineal gland:
15.6
pituitary gland:
17.7
retina:
20.8
ELMOD2
ENSSSCG00000009055
ENSG00000179387
ELMO domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
23.6
pineal gland:
20.3
ELMOD3
ENSSSCG00000008238
ENSG00000115459
ELMO domain containing 3
Tissue enhanced
Detected in all
adipose tissue:
80.9
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
ELOF1
ENSSSCG00000013613
ENSG00000130165
Elongation factor 1 homolog
Tissue enriched
Detected in all
testis:
130.2
ELOVL1
ENSSSCG00000035238
ENSG00000066322
Elongation of very long chain fatty acids protein 1
Tissue enhanced
Detected in all
brain:
60.5
ELOVL2
ENSSSCG00000001045
ENSG00000197977
ELOVL fatty acid elongase 2
Group enriched
Detected in many
brain:
34.3
pineal gland:
12.8
retina:
14.3
testis:
19.2
vagus nerve:
25.6
ELOVL3
ENSSSCG00000010577
ENSG00000119915
Elongation of very long chain fatty acids protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
22.3
ELOVL4
ENSSSCG00000028080
ENSG00000118402
ELOVL fatty acid elongase 4
Tissue enhanced
Detected in all
pineal gland:
35.1
retina:
59.9
ELOVL5
ENSSSCG00000024149
ENSG00000012660
ELOVL fatty acid elongase 5
Tissue enhanced
Detected in all
adipose tissue:
86.4
ELOVL6
ENSSSCG00000036236
ENSG00000170522
ELOVL fatty acid elongase 6
Tissue enhanced
Detected in many
adipose tissue:
71.4
aorta:
68.9
ELOVL7
ENSSSCG00000035012
ENSG00000164181
ELOVL fatty acid elongase 7
Tissue enhanced
Detected in all
brain:
45.3
male glands:
53.5
ELSPBP1
ENSSSCG00000003125
ENSG00000169393
Epididymal sperm-binding protein 1 precursor
Tissue enriched
Detected in some
epididymis:
206.4
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