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Human disease related genes
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UMAP gene cluster
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DRD3
ENSSSCG00000011911
ENSG00000151577
Dopamine receptor D3
Tissue enriched
Detected in some
brain:
26.2
DRD4
ENSSSCG00000012851
ENSG00000069696
Dopamine receptor D4
Tissue enriched
Detected in some
retina:
113.1
DRD5
ENSSSCG00000008730
ENSG00000169676
Dopamine receptor D5
Group enriched
Detected in some
brain:
13.5
retina:
11.6
DRP2
ENSSSCG00000012492
ENSG00000102385
Dystrophin related protein 2
Group enriched
Detected in some
brain:
31.8
vagus nerve:
94.2
DSC1
ENSSSCG00000003726
ENSG00000134765
Desmocollin 1
Tissue enriched
Detected in many
skin:
66.6
DSC3
ENSSSCG00000024800
ENSG00000134762
Desmocollin 3
Tissue enhanced
Detected in many
cornea:
77.5
mouth:
100.5
skin:
50.9
DSCAM
ENSSSCG00000012072
ENSG00000171587
DS cell adhesion molecule
Group enriched
Detected in some
brain:
21.0
pituitary gland:
7.2
retina:
7.5
testis:
9.0
DSCAML1
ENSSSCG00000015082
ENSG00000177103
DS cell adhesion molecule like 1
Tissue enhanced
Detected in some
brain:
15.0
fallopian tube:
6.9
retina:
10.8
DSEL
ENSSSCG00000035941
ENSG00000171451
Dermatan sulfate epimerase-like
Tissue enhanced
Detected in many
pituitary gland:
37.4
thyroid gland:
28.7
DSG1
ENSSSCG00000020694
ENSG00000134760
Desmoglein-1 precursor
Group enriched
Detected in some
cornea:
61.4
mouth:
63.3
skin:
32.2
DSG2
ENSSSCG00000022739
ENSG00000046604
Desmoglein 2
Tissue enhanced
Detected in many
large intestine:
62.7
male glands:
37.6
DSG3
ENSSSCG00000027160
ENSG00000134757
Desmoglein 3
Group enriched
Detected in many
cornea:
35.0
esophagus:
18.7
mouth:
66.6
skin:
41.8
DSG4
ENSSSCG00000020740
ENSG00000175065
Desmoglein 4
Tissue enriched
Detected in some
skin:
62.0
DSP
ENSSSCG00000001025
ENSG00000096696
Desmoplakin
Tissue enhanced
Detected in all
cornea:
119.8
mouth:
102.2
skin:
94.4
DTHD1
ENSSSCG00000028471
ENSG00000197057
Death domain containing 1
Group enriched
Detected in some
brain:
21.9
fallopian tube:
54.2
lung:
17.8
upper respiratory system:
28.9
DTL
ENSSSCG00000015600
ENSG00000143476
Denticleless E3 ubiquitin protein ligase homolog
Tissue enhanced
Detected in many
lymphoid tissue:
17.4
testis:
27.6
DTNA
ENSSSCG00000028047
ENSG00000134769
Dystrobrevin alpha
Tissue enhanced
Detected in many
lens:
51.0
skeletal muscle:
55.0
DTX3
ENSSSCG00000000449
ENSG00000178498
Deltex E3 ubiquitin ligase 3
Tissue enhanced
Detected in all
male glands:
80.2
DTX3L
ENSSSCG00000011876
ENSG00000163840
Deltex E3 ubiquitin ligase 3L
Tissue enhanced
Detected in many
small intestine:
37.8
DUOX1
ENSSSCG00000004675
ENSG00000137857
Dual oxidase 1 precursor
Tissue enhanced
Detected in many
mouth:
24.9
thyroid gland:
16.7
DUOX2
ENSSSCG00000004678
ENSG00000140279
Dual oxidase 2 precursor
Group enriched
Detected in many
gallbladder:
21.4
large intestine:
37.0
stomach:
52.0
thyroid gland:
72.5
upper respiratory system:
24.4
DUOXA1
ENSSSCG00000004677
ENSG00000140254
Dual oxidase maturation factor 1
Tissue enhanced
Detected in many
mouth:
24.3
stomach:
29.6
thyroid gland:
46.7
DUOXA2
ENSSSCG00000004676
ENSG00000140274
Dual oxidase maturation factor 2
Tissue enhanced
Detected in many
large intestine:
30.1
stomach:
34.1
thyroid gland:
45.4
upper respiratory system:
28.0
DUPD1
ENSSSCG00000010317
ENSG00000188716
Dual specificity phosphatase and pro isomerase domain containing 1
Tissue enhanced
Detected in all
skeletal muscle:
28.3
DUS4L
ENSSSCG00000028433
ENSG00000105865
Dihydrouridine synthase 4 like
Tissue enhanced
Detected in all
lens:
45.3
DUSP1
ENSSSCG00000016991
ENSG00000120129
Dual specificity protein phosphatase 1
Tissue enhanced
Detected in all
male glands:
173.1
DUSP13
ENSSSCG00000035105
ENSG00000079393
Dual specificity protein phosphatase 13
Tissue enriched
Detected in some
skeletal muscle:
54.0
DUSP15
ENSSSCG00000007232
ENSG00000149599
Dual specificity phosphatase 15
Group enriched
Detected in many
testis:
74.0
vagus nerve:
20.7
DUSP21
ENSSSCG00000023500
ENSG00000189037
Dual specificity phosphatase 21
Tissue enriched
Detected in some
testis:
39.0
DUSP26
ENSSSCG00000015835
ENSG00000133878
Dual specificity phosphatase 26
Tissue enhanced
Detected in some
brain:
26.3
heart:
19.2
retina:
17.4
skeletal muscle:
49.5
DUSP27
ENSSSCG00000006311
ENSG00000198842
Dual specificity phosphatase 27, atypical
Group enriched
Detected in some
heart:
19.4
skeletal muscle:
44.7
DUSP4
ENSSSCG00000015850
ENSG00000120875
Dual specificity phosphatase 4
Tissue enhanced
Detected in many
ovary:
53.6
DUSP5
ENSSSCG00000040815
ENSG00000138166
Dual specificity phosphatase 5
Tissue enhanced
Detected in many
brain:
23.3
ovary:
27.1
DUSP8
ENSSSCG00000032911
ENSG00000184545
Dual specificity phosphatase 8
Tissue enhanced
Detected in many
brain:
29.0
heart:
28.8
DUSP9
ENSSSCG00000012774
ENSG00000130829
Dual specificity phosphatase 9
Group enriched
Detected in some
adrenal gland:
13.2
kidney:
32.4
DYDC1
ENSSSCG00000010338
ENSG00000170788
DPY30 domain containing 1
Tissue enhanced
Detected in some
brain:
10.0
testis:
21.2
DYDC2
ENSSSCG00000010339
ENSG00000133665
DPY30 domain containing 2
Tissue enhanced
Detected in all
fallopian tube:
26.6
upper respiratory system:
26.8
DYNC1I1
ENSSSCG00000015335
ENSG00000158560
Dynein cytoplasmic 1 intermediate chain 1
Group enriched
Detected in many
brain:
30.5
lens:
119.7
DYNC1LI2
ENSSSCG00000036210
ENSG00000135720
Cytoplasmic dynein 1 light intermediate chain 2
Tissue enhanced
Detected in all
brain:
65.2
DYNLRB2
ENSSSCG00000031421
ENSG00000168589
Dynein light chain roadblock-type 2
Tissue enhanced
Detected in many
choroid plexus:
44.0
fallopian tube:
41.6
upper respiratory system:
44.9
DYNLT1
ENSSSCG00000033107
ENSG00000146425
Dynein light chain Tctex-type 1
Tissue enhanced
Detected in all
male glands:
52.6
DYRK1B
ENSSSCG00000027197
ENSG00000105204
Dual specificity tyrosine phosphorylation regulated kinase 1B
Tissue enhanced
Detected in all
skeletal muscle:
71.1
DYRK3
ENSSSCG00000015649
ENSG00000143479
Dual specificity tyrosine phosphorylation regulated kinase 3
Tissue enhanced
Detected in all
lens:
49.1
testis:
37.9
DYRK4
ENSSSCG00000000721
ENSG00000010219
Dual specificity tyrosine phosphorylation regulated kinase 4
Tissue enriched
Detected in some
testis:
44.2
DYSF
ENSSSCG00000008312
ENSG00000135636
Dysferlin
Tissue enhanced
Detected in all
skeletal muscle:
45.7
DYTN
ENSSSCG00000035158
ENSG00000232125
Dystrotelin
Tissue enriched
Detected in single
testis:
5.8
DZANK1
ENSSSCG00000007094
ENSG00000089091
Double zinc ribbon and ankyrin repeat domains 1
Tissue enhanced
Detected in all
brain:
81.4
DZIP1
ENSSSCG00000009501
ENSG00000134874
DAZ interacting zinc finger protein 1
Tissue enhanced
Detected in all
brain:
71.9
DZIP1L
ENSSSCG00000027467
ENSG00000158163
DAZ interacting zinc finger protein 1 like
Tissue enhanced
Detected in many
choroid plexus:
47.9
DZIP3
ENSSSCG00000011940
ENSG00000198919
DAZ interacting zinc finger protein 3
Tissue enhanced
Detected in all
epididymis:
30.0
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