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Keyword
Chromosome
1
2
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6
7
8
9
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11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
COLEC11
ENSSSCG00000025629
ENSG00000118004
Collectin subfamily member 11
Tissue enriched
Detected in all
liver:
41.1
COLEC12
ENSSSCG00000040397
ENSG00000158270
Collectin subfamily member 12
Tissue enhanced
Detected in many
cartilage:
131.9
synovial tissue:
54.7
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
COLQ
ENSSSCG00000028911
ENSG00000206561
Collagen like tail subunit of asymmetric acetylcholinesterase
Tissue enhanced
Detected in many
kidney:
19.9
COMMD1
ENSSSCG00000008376
ENSG00000173163
Copper metabolism domain containing 1
Tissue enhanced
Detected in all
lens:
50.1
COMMD2
ENSSSCG00000011705
ENSG00000114744
COMM domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
35.9
COMMD6
ENSSSCG00000009464
ENSG00000136111
COMM domain-containing protein 6
Tissue enhanced
Detected in all
adrenal gland:
101.6
COMMD8
ENSSSCG00000033373
ENSG00000169019
COMM domain containing 8
Tissue enhanced
Detected in all
lens:
32.4
COMMD9
ENSSSCG00000013293
ENSG00000110442
COMM domain containing 9
Tissue enhanced
Detected in all
brain:
70.0
COMP
ENSSSCG00000013916
ENSG00000105664
Cartilage oligomeric matrix protein
Tissue enriched
Detected in some
cartilage:
691.8
COMT
ENSSSCG00000010132
ENSG00000093010
Catechol O-methyltransferase
Tissue enhanced
Detected in all
liver:
118.4
COPB1
ENSSSCG00000013392
ENSG00000129083
Coatomer subunit beta
Tissue enhanced
Detected in all
male glands:
88.3
COPB2
ENSSSCG00000011662
ENSG00000184432
Coatomer protein complex subunit beta 2
Tissue enhanced
Detected in all
male glands:
114.9
COPG2
ENSSSCG00000016553
ENSG00000158623
Coatomer subunit gamma-2
Tissue enhanced
Detected in all
pituitary gland:
74.7
COPS3
ENSSSCG00000018051
ENSG00000141030
COP9 signalosome complex subunit 3
Tissue enhanced
Detected in all
testis:
108.2
COPS5
ENSSSCG00000006203
ENSG00000121022
COP9 signalosome complex subunit 5
Tissue enhanced
Detected in all
lens:
53.4
COPS6
ENSSSCG00000034893
ENSG00000168090
COP9 signalosome complex subunit 6
Tissue enhanced
Detected in all
lens:
90.8
COPZ1
ENSSSCG00000000290
ENSG00000111481
Coatomer protein complex subunit zeta 1
Tissue enhanced
Detected in all
male glands:
114.8
COQ10A
ENSSSCG00000025190
ENSG00000135469
Coenzyme Q10A
Tissue enhanced
Detected in many
heart:
21.6
skeletal muscle:
52.3
COQ8A
ENSSSCG00000010861
ENSG00000163050
Coenzyme Q8A
Tissue enhanced
Detected in all
heart:
66.9
male glands:
57.2
skeletal muscle:
138.1
COQ9
ENSSSCG00000025284
ENSG00000088682
Coenzyme Q9
Tissue enhanced
Detected in all
heart:
71.7
skeletal muscle:
80.6
CORIN
ENSSSCG00000008813
ENSG00000145244
Corin, serine peptidase
Group enriched
Detected in some
choroid plexus:
15.0
heart:
43.5
liver:
18.0
CORO1A
ENSSSCG00000038055
ENSG00000102879
Coronin 1A
Tissue enhanced
Detected in many
lymphoid tissue:
109.8
upper respiratory system:
54.6
CORO1C
ENSSSCG00000009944
ENSG00000110880
Coronin 1C
Tissue enhanced
Detected in all
lens:
85.2
CORO2A
ENSSSCG00000005375
ENSG00000106789
Coronin 2A
Tissue enhanced
Detected in many
large intestine:
25.3
small intestine:
30.2
CORO2B
ENSSSCG00000004962
ENSG00000103647
Coronin 2B
Tissue enhanced
Detected in many
brain:
52.5
CORO6
ENSSSCG00000017792
ENSG00000167549
Coronin 6
Tissue enriched
Detected in many
skeletal muscle:
101.5
CORT
ENSSSCG00000027822
ENSG00000241563
Cortistatin precursor
Group enriched
Detected in some
brain:
6.5
testis:
4.3
COTL1
ENSSSCG00000037645
ENSG00000103187
Coactosin like F-actin binding protein 1
Tissue enriched
Detected in many
lens:
185.6
COX1
ENSSSCG00000018075
ENSG00000198804
Cytochrome c oxidase subunit 1
Tissue enhanced
Detected in all
heart:
2782.5
COX16
ENSSSCG00000002316
ENSG00000133983
COX16, cytochrome c oxidase assembly homolog
Tissue enhanced
Detected in all
lens:
34.1
COX2
ENSSSCG00000018078
ENSG00000198712
Cytochrome c oxidase subunit II (mitochondrion)
Tissue enhanced
Detected in all
heart:
2180.4
COX3
ENSSSCG00000018082
ENSG00000198938
Cytochrome c oxidase subunit 3
Tissue enhanced
Detected in all
heart:
2427.5
COX4I1
ENSSSCG00000029034
ENSG00000131143
Cytochrome c oxidase subunit 4I1
Tissue enhanced
Detected in all
heart:
237.8
COX4I2
ENSSSCG00000038384
ENSG00000131055
Cytochrome c oxidase subunit 4I2
Tissue enhanced
Detected in many
cartilage:
113.6
COX5A
ENSSSCG00000024316
ENSG00000178741
Cytochrome c oxidase subunit 5A
Tissue enhanced
Detected in all
heart:
90.1
skeletal muscle:
146.7
COX5B
ENSSSCG00000008195
ENSG00000135940
Cytochrome c oxidase subunit 5B, mitochondrial
Tissue enhanced
Detected in all
heart:
93.9
skeletal muscle:
105.6
COX6A2
ENSSSCG00000036789
ENSG00000156885
Cytochrome c oxidase subunit 6A2
Tissue enhanced
Detected in all
heart:
67.7
skeletal muscle:
101.5
COX6B2
ENSSSCG00000035612
ENSG00000160471
Cytochrome c oxidase subunit 6B2
Tissue enriched
Detected in some
testis:
128.8
COX7A1
ENSSSCG00000037792
ENSG00000161281
Cytochrome c oxidase subunit 7A1, mitochondrial
Tissue enhanced
Detected in all
heart:
61.1
skeletal muscle:
66.1
COX7A2
ENSSSCG00000004480
Cytochrome c oxidase subunit 7A2, mitochondrial
Tissue enhanced
Detected in all
testis:
75.3
COX7B2
ENSSSCG00000036922
ENSG00000170516
Cytochrome c oxidase subunit 7B2
Tissue enriched
Detected in some
testis:
51.0
COX8C
ENSSSCG00000002462
ENSG00000187581
Cytochrome c oxidase subunit 8C
Tissue enriched
Detected in some
testis:
30.8
COX8H
ENSSSCG00000014560
COX8H protein
Tissue enhanced
Detected in some
heart:
116.6
male glands:
58.9
mouth:
53.1
skeletal muscle:
265.2
CP
ENSSSCG00000011700
ENSG00000047457
Ceruloplasmin precursor
Tissue enriched
Detected in many
liver:
192.8
CPA1
ENSSSCG00000016557
ENSG00000091704
Carboxypeptidase A1
Tissue enhanced
Detected in many
testis:
18.3
CPA2
ENSSSCG00000016559
ENSG00000158516
Carboxypeptidase A2
Tissue enriched
Detected in some
testis:
24.2
CPA5
ENSSSCG00000016555
ENSG00000158525
Carboxypeptidase A5
Tissue enriched
Detected in some
testis:
53.8
CPAMD8
ENSSSCG00000013869
ENSG00000160111
C3 and PZP like, alpha-2-macroglobulin domain containing 8
Tissue enhanced
Detected in many
cartilage:
25.2
cervix:
18.1
ductus deferens:
19.3
lymphoid tissue:
19.7
synovial tissue:
19.4
CPB1
ENSSSCG00000011694
ENSG00000153002
Carboxypeptidase B precursor
Tissue enhanced
Detected in some
adipose tissue:
3.4
testis:
8.5
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