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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C15orf48
ENSSSCG00000004670
ENSG00000166920
Chromosome 15 open reading frame 48
Tissue enriched
Detected in many
large intestine:
98.8
C15orf59
ENSSSCG00000001916
ENSG00000205363
Chromosome 15 open reading frame 59
Tissue enhanced
Detected in many
brain:
33.5
heart:
32.0
skeletal muscle:
17.8
C15orf61
ENSSSCG00000004954
ENSG00000189227
Chromosome 15 open reading frame 61
Tissue enhanced
Detected in many
lens:
69.9
C15orf65
ENSSSCG00000032854
ENSG00000261652
Chromosome 15 open reading frame 65
Tissue enriched
Detected in some
testis:
31.2
C16orf45
ENSSSCG00000032956
ENSG00000166780
Chromosome 16 open reading frame 45
Group enriched
Detected in many
brain:
44.4
pineal gland:
43.2
C16orf46
ENSSSCG00000035388
ENSG00000166455
Chromosome 16 open reading frame 46
Tissue enriched
Detected in many
testis:
58.9
C16orf54
ENSSSCG00000029752
ENSG00000185905
Chromosome 16 open reading frame 54
Tissue enhanced
Detected in many
lung:
33.0
lymphoid tissue:
38.1
C16orf74
ENSSSCG00000002662
ENSG00000154102
Chromosome 16 open reading frame 74
Tissue enhanced
Detected in all
cervix:
91.3
C16orf78
ENSSSCG00000002839
ENSG00000166152
Chromosome 16 open reading frame 78
Tissue enriched
Detected in single
testis:
49.1
C16orf86
ENSSSCG00000021711
ENSG00000159761
Chromosome 16 open reading frame 86
Tissue enriched
Detected in many
testis:
21.9
C16orf87
ENSSSCG00000022333
ENSG00000155330
Chromosome 16 open reading frame 87
Tissue enhanced
Detected in all
testis:
31.0
C16orf90
ENSSSCG00000007957
ENSG00000215131
Chromosome 16 open reading frame 90
Tissue enriched
Detected in some
testis:
38.9
C17orf113
ENSSSCG00000017417
ENSG00000267221
Chromosome 17 open reading frame 113
Tissue enhanced
Detected in many
cartilage:
15.0
stomach:
20.4
C17orf53
ENSSSCG00000017364
ENSG00000125319
Chromosome 17 open reading frame 53
Tissue enriched
Detected in many
testis:
33.2
C17orf58
ENSSSCG00000032181
ENSG00000186665
Chromosome 17 open reading frame 58
Tissue enhanced
Detected in many
brain:
48.1
C17orf64
ENSSSCG00000017679
ENSG00000141371
Chromosome 17 open reading frame 64
Tissue enriched
Detected in single
testis:
39.4
C17orf67
ENSSSCG00000030781
ENSG00000214226
Chromosome 17 open reading frame 67
Tissue enhanced
Detected in many
brain:
21.9
choroid plexus:
8.7
C17orf98
ENSSSCG00000037753
ENSG00000275489
Chromosome 17 open reading frame 98
Tissue enriched
Detected in many
testis:
41.1
C18orf32
ENSSSCG00000034415
ENSG00000177576
Chromosome 18 open reading frame 32
Tissue enhanced
Detected in all
male glands:
53.3
C18orf63
ENSSSCG00000004874
ENSG00000206043
Chromosome 18 open reading frame 63
Group enriched
Detected in some
ovary:
16.9
testis:
22.4
C19orf24
ENSSSCG00000028040
ENSG00000228300
Chromosome 19 open reading frame 24
Group enriched
Detected in many
cartilage:
9.1
male glands:
34.2
ovary:
8.7
C19orf38
ENSSSCG00000013632
ENSG00000214212
Chromosome 19 open reading frame 38
Tissue enhanced
Detected in many
male glands:
32.4
C19orf47
ENSSSCG00000027016
ENSG00000160392
Chromosome 19 open reading frame 47
Tissue enhanced
Detected in all
heart:
38.4
skeletal muscle:
62.6
C19orf67
ENSSSCG00000013769
ENSG00000188032
Chromosome 19 open reading frame 67
Tissue enriched
Detected in many
testis:
38.0
C19orf71
ENSSSCG00000013482
ENSG00000183397
Chromosome 19 open reading frame 71
Tissue enriched
Detected in some
testis:
100.7
C19orf84
ENSSSCG00000039649
ENSG00000262874
Chromosome 19 open reading frame 84
Group enriched
Detected in many
cervix:
6.4
lens:
24.1
C1orf100
ENSSSCG00000010873
ENSG00000173728
Chromosome 1 open reading frame 100
Tissue enriched
Detected in single
testis:
57.5
C1orf115
ENSSSCG00000027882
ENSG00000162817
Chromosome 1 open reading frame 115
Tissue enhanced
Detected in many
small intestine:
52.4
C1orf116
ENSSSCG00000032446
ENSG00000182795
Chromosome 1 open reading frame 116
Tissue enhanced
Detected in many
kidney:
35.4
mouth:
34.5
C1orf122
ENSSSCG00000038888
ENSG00000197982
Chromosome 1 open reading frame 122
Tissue enhanced
Detected in all
lens:
64.4
C1orf141
ENSSSCG00000003803
ENSG00000203963
Chromosome 1 open reading frame 141
Tissue enriched
Detected in all
testis:
40.3
C1orf158
ENSSSCG00000003442
ENSG00000157330
Chromosome 1 open reading frame 158
Tissue enriched
Detected in some
testis:
83.9
C1orf174
ENSSSCG00000031102
ENSG00000198912
UPF0688 protein C1orf174 homolog
Tissue enhanced
Detected in all
testis:
29.5
C1orf185
ENSSSCG00000031188
ENSG00000204006
Chromosome 1 open reading frame 185
Tissue enriched
Detected in some
testis:
39.2
C1orf189
ENSSSCG00000006555
ENSG00000163263
Chromosome 1 open reading frame 189
Tissue enhanced
Detected in some
fallopian tube:
41.3
testis:
76.4
upper respiratory system:
63.5
C1orf198
ENSSSCG00000010181
ENSG00000119280
Chromosome 1 open reading frame 198
Tissue enhanced
Detected in all
brain:
51.1
C1orf21
ENSSSCG00000015565
ENSG00000116667
Chromosome 1 open reading frame 21
Tissue enhanced
Detected in all
skeletal muscle:
122.4
C1orf210
ENSSSCG00000003951
ENSG00000253313
Chromosome 1 open reading frame 210
Tissue enhanced
Detected in many
kidney:
64.1
liver:
43.8
stomach:
40.6
C1orf216
ENSSSCG00000037600
ENSG00000142686
Chromosome 1 open reading frame 216
Tissue enhanced
Detected in many
brain:
15.0
C1orf228
ENSSSCG00000033259
ENSG00000198520
Chromosome 1 open reading frame 228
Tissue enhanced
Detected in many
epididymis:
26.3
testis:
16.2
C1orf56
ENSSSCG00000006639
ENSG00000143443
Chromosome 1 open reading frame 56
Tissue enriched
Detected in some
testis:
180.1
C1orf68
ENSSSCG00000006599
ENSG00000198854
Chromosome 1 open reading frame 68
Tissue enriched
Detected in some
skin:
78.1
C1orf87
ENSSSCG00000003823
ENSG00000162598
Chromosome 1 open reading frame 87
Group enriched
Detected in some
fallopian tube:
46.7
lung:
18.8
upper respiratory system:
18.5
C1QA
ENSSSCG00000003524
ENSG00000173372
Complement C1q subcomponent subunit A precursor
Tissue enhanced
Detected in all
lymphoid tissue:
142.8
synovial tissue:
77.9
C1QB
ENSSSCG00000033512
ENSG00000173369
Complement C1q subcomponent subunit B precursor
Tissue enhanced
Detected in many
lymphoid tissue:
125.8
synovial tissue:
91.1
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C1QL1
ENSSSCG00000039101
ENSG00000131094
C1q-related factor precursor
Group enriched
Detected in some
brain:
32.7
pineal gland:
19.1
retina:
13.8
C1QL2
ENSSSCG00000015717
ENSG00000144119
Complement C1q like 2
Group enriched
Detected in some
brain:
12.9
pituitary gland:
3.2
retina:
10.1
C1QL3
ENSSSCG00000011043
ENSG00000165985
Complement C1q like 3
Tissue enriched
Detected in many
brain:
39.1
C1QL4
ENSSSCG00000000197
ENSG00000186897
Complement C1q like 4
Tissue enhanced
Detected in some
brain:
11.8
cervix:
22.0
endometrium:
9.0
fallopian tube:
10.5
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