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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ASAH1
ENSSSCG00000006995
ENSG00000104763
N-acylsphingosine amidohydrolase 1
Tissue enhanced
Detected in all
choroid plexus:
100.9
ASB10
ENSSSCG00000029241
ENSG00000146926
Ankyrin repeat and SOCS box containing 10
Tissue enhanced
Detected in some
heart:
26.0
skeletal muscle:
45.9
ASB11
ENSSSCG00000012133
ENSG00000165192
Ankyrin repeat and SOCS box protein 11 isoform a
Group enriched
Detected in some
ductus deferens:
23.4
epididymis:
19.8
heart:
29.6
skeletal muscle:
51.5
ASB12
ENSSSCG00000032889
ENSG00000198881
Ankyrin repeat and SOCS box containing 12
Tissue enhanced
Detected in some
heart:
8.8
skeletal muscle:
43.3
testis:
12.5
ASB13
ENSSSCG00000011145
ENSG00000196372
Ankyrin repeat and SOCS box containing 13
Tissue enhanced
Detected in all
kidney:
56.4
ASB14
ENSSSCG00000035320
ENSG00000239388
Ankyrin repeat and SOCS box containing 14
Tissue enhanced
Detected in many
fallopian tube:
33.3
skeletal muscle:
21.4
ASB15
ENSSSCG00000016606
ENSG00000146809
Ankyrin repeat and SOCS box containing 15
Group enriched
Detected in some
heart:
55.5
mouth:
14.1
skeletal muscle:
45.2
ASB16
ENSSSCG00000039673
ENSG00000161664
Ankyrin repeat and SOCS box containing 16
Tissue enhanced
Detected in all
skeletal muscle:
61.1
ASB17
ENSSSCG00000031522
ENSG00000154007
Ankyrin repeat and SOCS box containing 17
Tissue enriched
Detected in single
testis:
55.4
ASB18
ENSSSCG00000016318
ENSG00000182177
Ankyrin repeat and SOCS box containing 18
Group enriched
Detected in some
heart:
24.6
skeletal muscle:
30.5
ASB2
ENSSSCG00000002467
ENSG00000100628
Ankyrin repeat and SOCS box containing 2
Group enriched
Detected in many
heart:
61.9
skeletal muscle:
119.2
ASB4
ENSSSCG00000015333
ENSG00000005981
Ankyrin repeat and SOCS box containing 4
Group enriched
Detected in some
heart:
21.9
liver:
30.6
pituitary gland:
17.2
skeletal muscle:
30.3
ASB5
ENSSSCG00000030395
ENSG00000164122
Ankyrin repeat and SOCS box containing 5
Tissue enriched
Detected in all
skeletal muscle:
107.3
ASB9
ENSSSCG00000012132
ENSG00000102048
Ankyrin repeat and SOCS box protein 9
Tissue enhanced
Detected in many
cornea:
21.6
mouth:
21.9
ASCC2
ENSSSCG00000025186
ENSG00000100325
Activating signal cointegrator 1 complex subunit 2
Tissue enhanced
Detected in all
lens:
55.2
ASCL1
ENSSSCG00000034557
ENSG00000139352
Achaete-scute family bHLH transcription factor 1
Tissue enhanced
Detected in some
brain:
17.4
liver:
10.7
pituitary gland:
40.4
thyroid gland:
11.5
ASCL2
ENSSSCG00000033507
ENSG00000183734
Achaete-scute homolog 2
Tissue enhanced
Detected in some
cornea:
18.8
large intestine:
9.5
small intestine:
10.7
urinary bladder:
9.3
ASCL3
ENSSSCG00000014572
ENSG00000176009
Achaete-scute family bHLH transcription factor 3
Tissue enhanced
Detected in many
salivary gland:
11.9
upper respiratory system:
21.0
ASCL4
ENSSSCG00000000159
ENSG00000187855
Achaete-scute family bHLH transcription factor 4
Tissue enriched
Detected in some
epididymis:
19.7
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ASGR1
ENSSSCG00000024926
ENSG00000141505
Asialoglycoprotein receptor 1
Tissue enriched
Detected in some
liver:
77.7
ASGR2
ENSSSCG00000017932
ENSG00000161944
Asialoglycoprotein receptor 2
Tissue enhanced
Detected in many
liver:
68.8
male glands:
21.1
ASIC1
ENSSSCG00000000216
ENSG00000110881
Acid sensing ion channel subunit 1
Tissue enhanced
Detected in some
brain:
21.9
ASIC2
ENSSSCG00000040177
ENSG00000108684
Acid sensing ion channel subunit 2
Group enriched
Detected in some
brain:
18.5
ductus deferens:
10.5
epididymis:
14.5
retina:
13.3
ASIC3
ENSSSCG00000027024
ENSG00000213199
Acid sensing ion channel subunit 3
Tissue enhanced
Detected in many
lymphoid tissue:
22.2
ASIC4
ENSSSCG00000029968
ENSG00000072182
Acid sensing ion channel subunit family member 4
Tissue enhanced
Detected in some
brain:
11.9
pituitary gland:
14.0
retina:
24.4
ASIC5
ENSSSCG00000008869
ENSG00000256394
Acid sensing ion channel subunit family member 5
Group enriched
Detected in some
pineal gland:
2.4
small intestine:
2.8
testis:
2.0
ASIP
ENSSSCG00000007277
ENSG00000101440
Agouti-signaling protein
Tissue enhanced
Detected in many
choroid plexus:
15.8
ASNA1
ENSSSCG00000038776
ENSG00000198356
ArsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tissue enhanced
Detected in all
lens:
37.9
ASPA
ENSSSCG00000017861
ENSG00000108381
Aspartoacylase
Tissue enhanced
Detected in many
brain:
56.0
kidney:
19.8
vagus nerve:
32.5
ASPDH
ENSSSCG00000023211
ENSG00000204653
Putative L-aspartate dehydrogenase
Group enriched
Detected in some
kidney:
30.5
liver:
45.5
ASPG
ENSSSCG00000039553
ENSG00000166183
Asparaginase
Tissue enhanced
Detected in many
liver:
7.6
male glands:
8.2
mesothelial tissue:
9.5
skin:
8.5
ASPH
ENSSSCG00000025087
ENSG00000198363
Aspartate beta-hydroxylase
Tissue enhanced
Detected in all
male glands:
108.5
ASPHD2
ENSSSCG00000009959
ENSG00000128203
Aspartate beta-hydroxylase domain containing 2
Tissue enhanced
Detected in many
brain:
22.6
stomach:
18.2
ASPM
ENSSSCG00000010896
ENSG00000066279
Abnormal spindle microtubule assembly
Tissue enhanced
Detected in many
lymphoid tissue:
29.3
ASPN
ENSSSCG00000008072
ENSG00000106819
Asporin precursor
Tissue enriched
Detected in all
dura mater:
89.1
ASPRV1
ENSSSCG00000033099
ENSG00000244617
Aspartic peptidase retroviral like 1
Tissue enhanced
Detected in many
skin:
31.6
ASRGL1
ENSSSCG00000013065
ENSG00000162174
Asparaginase like 1
Tissue enhanced
Detected in all
testis:
45.8
ASS1
ENSSSCG00000005701
ENSG00000130707
Argininosuccinate synthase 1
Group enriched
Detected in many
kidney:
136.1
liver:
198.2
ASTL
ENSSSCG00000008126
ENSG00000188886
Astacin like metalloendopeptidase
Tissue enriched
Detected in single
lymphoid tissue:
6.7
ASTN1
ENSSSCG00000015513
ENSG00000152092
Astrotactin 1
Tissue enhanced
Detected in many
brain:
33.8
pineal gland:
12.0
pituitary gland:
15.2
ASTN2
ENSSSCG00000005502
ENSG00000148219
Astrotactin 2
Group enriched
Detected in many
brain:
31.8
cornea:
21.1
ASXL3
ENSSSCG00000003736
ENSG00000141431
Additional sex combs like 3, transcriptional regulator
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.4
testis:
16.1
ASZ1
ENSSSCG00000016627
ENSG00000154438
Ankyrin repeat, SAM and basic leucine zipper domain containing 1
Tissue enriched
Detected in some
testis:
27.9
ATAD2
ENSSSCG00000005983
ENSG00000156802
ATPase family, AAA domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
testis:
37.3
ATAD5
ENSSSCG00000035954
ENSG00000176208
ATPase family, AAA domain containing 5
Tissue enhanced
Detected in many
lymphoid tissue:
27.7
ATCAY
ENSSSCG00000026754
ENSG00000167654
ATCAY, caytaxin
Group enriched
Detected in some
brain:
33.1
pineal gland:
17.0
pituitary gland:
12.7
retina:
11.3
ATF3
ENSSSCG00000015595
ENSG00000162772
Activating transcription factor 3
Tissue enhanced
Detected in many
aorta:
93.6
ductus deferens:
75.9
ATF4
ENSSSCG00000000084
ENSG00000128272
Cyclic AMP-dependent transcription factor ATF-4
Tissue enhanced
Detected in all
skeletal muscle:
180.7
ATF5
ENSSSCG00000003201
ENSG00000169136
Activating transcription factor 5
Tissue enhanced
Detected in all
lens:
54.3
liver:
130.9
salivary gland:
58.8
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