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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ARHGEF16
ENSSSCG00000024223
ENSG00000130762
Rho guanine nucleotide exchange factor 16
Tissue enhanced
Detected in many
stomach:
83.6
ARHGEF19
ENSSSCG00000003472
ENSG00000142632
Rho guanine nucleotide exchange factor 19
Tissue enhanced
Detected in all
cartilage:
46.8
ARHGEF25
ENSSSCG00000000435
ENSG00000240771
Rho guanine nucleotide exchange factor 25
Tissue enhanced
Detected in all
cervix:
47.4
ARHGEF26
ENSSSCG00000024205
ENSG00000114790
Rho guanine nucleotide exchange factor 26
Tissue enhanced
Detected in all
smooth muscle:
49.9
ARHGEF28
ENSSSCG00000028317
ENSG00000214944
Rho guanine nucleotide exchange factor 28
Tissue enhanced
Detected in many
salivary gland:
46.9
ARHGEF33
ENSSSCG00000040621
ENSG00000214694
Rho guanine nucleotide exchange factor 33
Tissue enriched
Detected in many
brain:
33.5
ARHGEF37
ENSSSCG00000014436
ENSG00000183111
Rho guanine nucleotide exchange factor 37
Tissue enhanced
Detected in many
lens:
48.8
ARHGEF38
ENSSSCG00000021764
ENSG00000236699
Rho guanine nucleotide exchange factor 38
Tissue enhanced
Detected in many
epididymis:
22.1
male glands:
29.4
ARHGEF39
ENSSSCG00000005314
ENSG00000137135
Rho guanine nucleotide exchange factor 39
Tissue enhanced
Detected in many
lymphoid tissue:
33.4
testis:
37.3
ARHGEF4
ENSSSCG00000035828
ENSG00000136002
Rho guanine nucleotide exchange factor 4
Tissue enhanced
Detected in many
brain:
29.4
lens:
18.4
ARHGEF5
ENSSSCG00000022525
ENSG00000050327
Rho guanine nucleotide exchange factor 5
Tissue enhanced
Detected in many
stomach:
28.9
ARHGEF9
ENSSSCG00000012362
ENSG00000131089
Cdc42 guanine nucleotide exchange factor 9
Tissue enhanced
Detected in many
brain:
38.2
pineal gland:
35.1
ARID3A
ENSSSCG00000037642
ENSG00000116017
AT-rich interaction domain 3A
Tissue enhanced
Detected in all
testis:
40.3
ARID3C
ENSSSCG00000010971
ENSG00000205143
AT-rich interaction domain 3C
Tissue enhanced
Detected in many
testis:
33.8
ARL1
ENSSSCG00000000870
ENSG00000120805
ADP ribosylation factor like GTPase 1
Tissue enhanced
Detected in all
male glands:
77.0
ARL14
ENSSSCG00000011734
ENSG00000179674
ADP ribosylation factor like GTPase 14
Tissue enriched
Detected in some
large intestine:
42.9
ARL14EPL
ENSSSCG00000014222
ENSG00000268223
ADP ribosylation factor like GTPase 14 effector protein like
Tissue enhanced
Detected in many
adipose tissue:
10.6
mouth:
10.9
vagus nerve:
20.3
ARL3
ENSSSCG00000031782
ENSG00000138175
ADP-ribosylation factor-like protein 3
Tissue enhanced
Detected in all
lens:
44.5
pineal gland:
36.6
ARL4C
ENSSSCG00000034293
ENSG00000188042
ADP-ribosylation factor-like protein 4C
Tissue enriched
Detected in many
ovary:
79.5
ARL4D
ENSSSCG00000017380
ENSG00000175906
ADP ribosylation factor like GTPase 4D
Tissue enhanced
Detected in many
dura mater:
20.3
kidney:
25.1
ARL8A
ENSSSCG00000036967
ENSG00000143862
ADP ribosylation factor like GTPase 8A
Tissue enhanced
Detected in all
brain:
58.1
ARL9
ENSSSCG00000008899
ENSG00000196503
ADP ribosylation factor like GTPase 9
Tissue enhanced
Detected in all
testis:
53.7
ARMC10
ENSSSCG00000028444
ENSG00000170632
Armadillo repeat-containing protein 10
Tissue enhanced
Detected in all
male glands:
71.9
ARMC3
ENSSSCG00000011078
ENSG00000165309
Armadillo repeat containing 3
Tissue enhanced
Detected in all
testis:
27.4
ARMC4
ENSSSCG00000011069
ENSG00000169126
Armadillo repeat containing 4
Tissue enhanced
Detected in many
choroid plexus:
24.0
fallopian tube:
53.8
upper respiratory system:
36.3
ARMCX1
ENSSSCG00000038569
ENSG00000126947
Armadillo repeat containing, X-linked 1
Tissue enhanced
Detected in many
kidney:
23.4
ARMCX2
ENSSSCG00000012510
ENSG00000184867
Armadillo repeat containing, X-linked 2
Tissue enhanced
Detected in many
brain:
18.4
pineal gland:
18.0
pituitary gland:
18.1
ARMCX4
ENSSSCG00000034821
ENSG00000196440
Armadillo repeat containing, X-linked 4
Tissue enhanced
Detected in many
choroid plexus:
20.9
ARMT1
ENSSSCG00000004088
ENSG00000146476
Protein-glutamate O-methyltransferase
Tissue enhanced
Detected in all
lens:
29.5
ARNT
ENSSSCG00000006646
ENSG00000143437
Aryl hydrocarbon receptor nuclear translocator
Tissue enhanced
Detected in all
dura mater:
99.1
ARNT2
ENSSSCG00000040288
ENSG00000172379
Aryl hydrocarbon receptor nuclear translocator 2
Tissue enhanced
Detected in many
brain:
40.4
cornea:
43.5
epididymis:
27.7
ARNTL2
ENSSSCG00000000551
ENSG00000029153
Aryl hydrocarbon receptor nuclear translocator like 2
Tissue enriched
Detected in many
lens:
77.3
ARPP21
ENSSSCG00000011238
ENSG00000172995
CAMP regulated phosphoprotein 21
Group enriched
Detected in some
brain:
43.2
lymphoid tissue:
74.2
skeletal muscle:
35.5
ARR3
ENSSSCG00000012379
ENSG00000120500
Arrestin-C
Tissue enriched
Detected in single
retina:
137.5
ARRDC4
ENSSSCG00000002252
ENSG00000140450
Arrestin domain containing 4
Tissue enhanced
Detected in all
lens:
48.0
ovary:
47.3
ARRDC5
ENSSSCG00000037183
ENSG00000205784
Arrestin domain containing 5
Tissue enriched
Detected in all
testis:
52.4
ARSB
ENSSSCG00000038535
ENSG00000113273
Arylsulfatase B
Tissue enhanced
Detected in many
brain:
56.3
kidney:
31.9
ARSE
ENSSSCG00000022129
ENSG00000157399
Arylsulfatase E precursor
Tissue enhanced
Detected in many
cartilage:
24.1
ARSG
ENSSSCG00000017261
ENSG00000141337
Arylsulfatase G
Group enriched
Detected in all
choroid plexus:
21.9
liver:
71.3
lymphoid tissue:
26.5
ARSI
ENSSSCG00000014448
ENSG00000183876
Arylsulfatase family member I
Tissue enriched
Detected in many
cartilage:
51.0
ARSJ
ENSSSCG00000009122
ENSG00000180801
Arylsulfatase family member J
Tissue enhanced
Detected in many
cartilage:
59.1
ART1
ENSSSCG00000038255
ENSG00000129744
ADP-ribosyltransferase 1
Tissue enriched
Detected in some
skeletal muscle:
58.0
ART3
ENSSSCG00000008976
ENSG00000156219
Ecto-ADP-ribosyltransferase 3 precursor
Group enriched
Detected in some
heart:
41.0
skeletal muscle:
38.0
testis:
37.7
ART4
ENSSSCG00000000607
ENSG00000111339
Ecto-ADP-ribosyltransferase 4 isoform 1
Tissue enhanced
Detected in many
lymphoid tissue:
28.9
ART5
ENSSSCG00000014798
ENSG00000167311
ADP-ribosyltransferase 5
Tissue enhanced
Detected in some
male glands:
9.5
mouth:
7.3
skeletal muscle:
31.8
ARTN
ENSSSCG00000034778
ENSG00000117407
Artemin
Tissue enhanced
Detected in many
ductus deferens:
7.4
male glands:
11.4
penis:
6.9
ARV1
ENSSSCG00000010179
ENSG00000173409
Protein ARV1
Tissue enhanced
Detected in all
brain:
33.1
ARVCF
ENSSSCG00000010133
ENSG00000099889
ARVCF, delta catenin family member
Tissue enriched
Detected in all
lens:
141.1
ARX
ENSSSCG00000020801
ENSG00000004848
Aristaless related homeobox
Group enriched
Detected in some
brain:
19.5
ovary:
19.2
skeletal muscle:
16.1
AS3MT
ENSSSCG00000010592
ENSG00000214435
Arsenite methyltransferase
Tissue enhanced
Detected in all
liver:
61.5
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