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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TXNRD2
ENSSSCG00000010131
ENSG00000184470
Thioredoxin reductase 2, mitochondrial
Low tissue specificity
Detected in all
TXNRD3
ENSSSCG00000023929
ENSG00000197763
Thioredoxin reductase 3
Tissue enhanced
Detected in all
testis:
54.8
TYK2
ENSSSCG00000013648
ENSG00000105397
Non-receptor tyrosine-protein kinase TYK2
Low tissue specificity
Detected in all
TYMS
ENSSSCG00000040678
ENSG00000176890
Thymidylate synthase
Tissue enhanced
Detected in many
lymphoid tissue:
29.7
upper respiratory system:
23.1
TYR
ENSSSCG00000026409
ENSG00000077498
Tyrosinase precursor
Tissue enhanced
Detected in many
kidney:
31.6
testis:
9.3
TYRO3
ENSSSCG00000004744
ENSG00000092445
TYRO3 protein tyrosine kinase
Group enriched
Detected in many
brain:
22.4
lens:
65.8
TYROBP
ENSSSCG00000002919
ENSG00000011600
TYRO protein tyrosine kinase-binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
70.7
synovial tissue:
61.1
TYRP1
ENSSSCG00000005193
ENSG00000107165
5,6-dihydroxyindole-2-carboxylic acid oxidase precursor
Low tissue specificity
Detected in all
TYSND1
ENSSSCG00000010259
ENSG00000156521
Trypsin domain containing 1
Low tissue specificity
Detected in all
TYW3
ENSSSCG00000003779
ENSG00000162623
TRNA wybutosine-synthesizing protein 3 homolog
Low tissue specificity
Detected in all
TYW5
ENSSSCG00000016087
ENSG00000162971
TRNA-yW synthesizing protein 5
Low tissue specificity
Detected in all
U2AF1L5
ENSSSCG00000033653
ENSG00000275895
U2 small nuclear RNA auxiliary factor 1 like 5
Low tissue specificity
Detected in all
U2AF2
ENSSSCG00000034815
ENSG00000063244
Splicing factor U2AF 65 kDa subunit
Low tissue specificity
Detected in all
U2SURP
ENSSSCG00000011684
ENSG00000163714
U2 snRNP associated SURP domain containing
Low tissue specificity
Detected in all
UACA
ENSSSCG00000004973
ENSG00000137831
Uveal autoantigen with coiled-coil domains and ankyrin repeats
Low tissue specificity
Detected in all
UAP1
ENSSSCG00000006340
ENSG00000117143
UDP-N-acetylglucosamine pyrophosphorylase 1
Low tissue specificity
Detected in all
UAP1L1
ENSSSCG00000040003
ENSG00000197355
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1
Low tissue specificity
Detected in all
UBA1
ENSSSCG00000012270
ENSG00000130985
Ubiquitin like modifier activating enzyme 1
Low tissue specificity
Detected in all
UBA5
ENSSSCG00000011631
ENSG00000081307
Ubiquitin like modifier activating enzyme 5
Low tissue specificity
Detected in all
UBA6
ENSSSCG00000008924
ENSG00000033178
Ubiquitin like modifier activating enzyme 6
Tissue enriched
Detected in all
pituitary gland:
66.5
UBA7
ENSSSCG00000011393
ENSG00000182179
Ubiquitin like modifier activating enzyme 7
Low tissue specificity
Detected in many
UBAC1
ENSSSCG00000033162
ENSG00000130560
UBA domain containing 1
Low tissue specificity
Detected in all
UBAC2
ENSSSCG00000009516
ENSG00000134882
UBA domain containing 2
Low tissue specificity
Detected in all
UBALD2
ENSSSCG00000023423
ENSG00000185262
UBA like domain containing 2
Tissue enhanced
Detected in all
stomach:
89.2
UBAP1
ENSSSCG00000021761
ENSG00000165006
Ubiquitin-associated protein 1
Low tissue specificity
Detected in all
UBAP2
ENSSSCG00000010987
ENSG00000137073
Ubiquitin associated protein 2
Low tissue specificity
Detected in all
UBAP2L
ENSSSCG00000006553
ENSG00000143569
Ubiquitin associated protein 2 like
Low tissue specificity
Detected in all
UBASH3A
ENSSSCG00000029511
ENSG00000160185
Ubiquitin associated and SH3 domain containing A
Tissue enhanced
Detected in all
lymphoid tissue:
28.8
UBASH3B
ENSSSCG00000015136
ENSG00000154127
Ubiquitin associated and SH3 domain containing B
Tissue enhanced
Detected in all
lymphoid tissue:
59.2
UBC
ENSSSCG00000029226
ENSG00000150991
Ubiquitin C
Low tissue specificity
Detected in all
UBE2A
ENSSSCG00000012621
ENSG00000077721
Ubiquitin conjugating enzyme E2 A
Low tissue specificity
Detected in all
UBE2B
ENSSSCG00000038953
ENSG00000119048
Ubiquitin-conjugating enzyme E2 B
Low tissue specificity
Detected in all
UBE2C
ENSSSCG00000007423
ENSG00000175063
Ubiquitin conjugating enzyme E2 C
Tissue enhanced
Detected in many
large intestine:
25.7
lymphoid tissue:
43.3
upper respiratory system:
30.0
UBE2D1
ENSSSCG00000033323
ENSG00000072401
Ubiquitin-conjugating enzyme E2 D1
Tissue enhanced
Detected in all
skeletal muscle:
89.5
UBE2D2
ENSSSCG00000036711
ENSG00000131508
Ubiquitin conjugating enzyme E2 D2
Tissue enhanced
Detected in all
lens:
164.5
UBE2D3
ENSSSCG00000035622
Ubiquitin-conjugating enzyme E2 D2
Low tissue specificity
Detected in all
UBE2D4
ENSSSCG00000016722
ENSG00000078967
Ubiquitin conjugating enzyme E2 D4 (putative)
Tissue enhanced
Detected in all
skeletal muscle:
119.7
UBE2E2
ENSSSCG00000011209
ENSG00000182247
Ubiquitin conjugating enzyme E2 E2
Tissue enhanced
Detected in all
lens:
53.3
UBE2G1
ENSSSCG00000017878
ENSG00000132388
Ubiquitin conjugating enzyme E2 G1
Tissue enhanced
Detected in all
skeletal muscle:
64.4
UBE2G2
ENSSSCG00000027165
ENSG00000184787
Ubiquitin conjugating enzyme E2 G2
Low tissue specificity
Detected in all
UBE2H
ENSSSCG00000016564
ENSG00000186591
Ubiquitin conjugating enzyme E2 H
Low tissue specificity
Detected in all
UBE2I
ENSSSCG00000021560
ENSG00000103275
SUMO-conjugating enzyme UBC9
Low tissue specificity
Detected in all
UBE2J1
ENSSSCG00000004317
ENSG00000198833
Ubiquitin-conjugating enzyme E2 J1
Low tissue specificity
Detected in all
UBE2J2
ENSSSCG00000003334
ENSG00000160087
Ubiquitin conjugating enzyme E2 J2
Low tissue specificity
Detected in all
UBE2K
ENSSSCG00000033602
ENSG00000078140
Ubiquitin-conjugating enzyme E2 K
Low tissue specificity
Detected in all
UBE2L6
ENSSSCG00000023379
ENSG00000156587
Ubiquitin/ISG15-conjugating enzyme E2 L6
Low tissue specificity
Detected in all
UBE2M
ENSSSCG00000037734
ENSG00000130725
Ubiquitin conjugating enzyme E2 M
Low tissue specificity
Detected in all
UBE2O
ENSSSCG00000029901
ENSG00000175931
Ubiquitin conjugating enzyme E2 O
Low tissue specificity
Detected in all
UBE2Q1
ENSSSCG00000006544
ENSG00000160714
Ubiquitin conjugating enzyme E2 Q1
Low tissue specificity
Detected in all
UBE2QL1
ENSSSCG00000035825
ENSG00000215218
Ubiquitin conjugating enzyme E2 Q family like 1
Tissue enhanced
Detected in all
brain:
29.4
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