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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Chromosome
1
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TUB
ENSSSCG00000014581
ENSG00000166402
Tubby bipartite transcription factor
Tissue enhanced
Detected in many
stomach:
57.3
TUBA1B
ENSSSCG00000000190
ENSG00000167552
Tubulin alpha-1B chain Detyrosinated tubulin alpha-1B chain
Tissue enhanced
Detected in all
brain:
214.6
lens:
298.3
TUBA1C
ENSSSCG00000000194
ENSG00000167553
Tubulin alpha 1c
Tissue enhanced
Detected in all
lens:
164.9
TUBA4A
ENSSSCG00000016216
ENSG00000127824
Tubulin alpha 4a
Tissue enhanced
Detected in many
brain:
63.2
skeletal muscle:
71.1
TUBA8
ENSSSCG00000000773
ENSG00000183785
Tubulin alpha 8
Tissue enhanced
Detected in all
skeletal muscle:
43.0
testis:
37.4
TUBAL3
ENSSSCG00000029077
ENSG00000178462
Tubulin alpha like 3
Low tissue specificity
Detected in all
TUBB
ENSSSCG00000001379
ENSG00000196230
Tubulin beta chain
Tissue enhanced
Detected in all
lens:
164.9
TUBB1
ENSSSCG00000007523
ENSG00000101162
Tubulin beta-1 chain
Tissue enhanced
Detected in many
bone marrow:
13.0
TUBB2B
ENSSSCG00000033655
ENSG00000137285
Tubulin beta-2B chain
Tissue enhanced
Detected in many
brain:
54.1
lens:
23.5
TUBB4B
ENSSSCG00000037046
ENSG00000188229
Tubulin beta 4B class IVb
Tissue enhanced
Detected in all
testis:
66.8
TUBB6
ENSSSCG00000038992
ENSG00000176014
Tubulin beta 6 class V
Low tissue specificity
Detected in all
TUBD1
ENSSSCG00000017669
ENSG00000108423
Tubulin delta 1
Low tissue specificity
Detected in all
TUBE1
ENSSSCG00000004423
ENSG00000074935
Tubulin epsilon 1
Low tissue specificity
Detected in all
TUBG2
ENSSSCG00000036106
ENSG00000037042
Tubulin gamma 2
Low tissue specificity
Detected in all
TUBGCP2
ENSSSCG00000010773
ENSG00000130640
Tubulin gamma complex associated protein 2
Low tissue specificity
Detected in all
TUBGCP3
ENSSSCG00000009553
ENSG00000126216
Tubulin gamma complex associated protein 3
Low tissue specificity
Detected in all
TUBGCP4
ENSSSCG00000004708
ENSG00000137822
Tubulin gamma complex associated protein 4
Low tissue specificity
Detected in all
TUBGCP5
ENSSSCG00000027105
ENSG00000275835
Tubulin gamma complex associated protein 5
Low tissue specificity
Detected in all
TUBGCP6
ENSSSCG00000000972
ENSG00000128159
Tubulin gamma complex associated protein 6
Low tissue specificity
Detected in all
TUFM
ENSSSCG00000007803
ENSG00000178952
Tu translation elongation factor, mitochondrial
Low tissue specificity
Detected in all
TUFT1
ENSSSCG00000006620
ENSG00000143367
Tuftelin 1
Tissue enhanced
Detected in many
cornea:
46.7
TULP3
ENSSSCG00000000737
ENSG00000078246
Tubby like protein 3
Tissue enhanced
Detected in all
lens:
45.9
TULP4
ENSSSCG00000031776
ENSG00000130338
Tubby like protein 4
Low tissue specificity
Detected in all
TUSC1
ENSSSCG00000005128
ENSG00000198680
Tumor suppressor candidate 1
Low tissue specificity
Detected in all
TUSC3
ENSSSCG00000021988
ENSG00000104723
Tumor suppressor candidate 3
Tissue enhanced
Detected in many
epididymis:
41.1
pineal gland:
61.3
pituitary gland:
43.7
TUSC5
ENSSSCG00000017801
ENSG00000184811
Tumor suppressor candidate 5
Tissue enhanced
Detected in many
adipose tissue:
114.0
aorta:
57.8
bone marrow:
47.3
TVP23A
ENSSSCG00000027101
ENSG00000166676
Trans-golgi network vesicle protein 23 homolog A
Tissue enhanced
Detected in many
brain:
20.6
TWF1
ENSSSCG00000000798
ENSG00000151239
Twinfilin actin binding protein 1
Tissue enhanced
Detected in all
lens:
64.3
TWF2
ENSSSCG00000011435
ENSG00000247596
Twinfilin actin binding protein 2
Low tissue specificity
Detected in all
TWIST1
ENSSSCG00000015370
ENSG00000122691
Twist family bHLH transcription factor 1
Tissue enhanced
Detected in many
adipose tissue:
31.3
dura mater:
47.7
TWIST2
ENSSSCG00000016343
ENSG00000233608
Twist family bHLH transcription factor 2
Tissue enhanced
Detected in many
skin:
55.5
TWISTNB
ENSSSCG00000025298
ENSG00000105849
DNA-directed RNA polymerase I subunit RPA43
Low tissue specificity
Detected in all
TWNK
ENSSSCG00000030428
ENSG00000107815
Twinkle mtDNA helicase
Low tissue specificity
Detected in all
TWSG1
ENSSSCG00000039663
ENSG00000128791
Twisted gastrulation BMP signaling modulator 1
Low tissue specificity
Detected in all
TXK
ENSSSCG00000008819
ENSG00000074966
TXK tyrosine kinase
Tissue enhanced
Detected in all
lymphoid tissue:
35.0
TXLNA
ENSSSCG00000003617
ENSG00000084652
Taxilin alpha
Low tissue specificity
Detected in all
TXLNB
ENSSSCG00000004143
ENSG00000164440
Taxilin beta
Tissue enhanced
Detected in many
heart:
50.7
skeletal muscle:
89.1
TXLNG
ENSSSCG00000040713
ENSG00000086712
Taxilin gamma
Low tissue specificity
Detected in all
TXNDC11
ENSSSCG00000007896
ENSG00000153066
Thioredoxin domain containing 11
Low tissue specificity
Detected in all
TXNDC12
ENSSSCG00000003867
ENSG00000117862
Thioredoxin domain containing 12
Low tissue specificity
Detected in all
TXNDC15
ENSSSCG00000026106
ENSG00000113621
Thioredoxin domain-containing protein 15 precursor
Low tissue specificity
Detected in all
TXNDC16
ENSSSCG00000035934
ENSG00000087301
Thioredoxin domain containing 16
Low tissue specificity
Detected in all
TXNDC17
ENSSSCG00000035820
ENSG00000129235
Thioredoxin domain containing 17
Low tissue specificity
Detected in all
TXNDC5
ENSSSCG00000034131
ENSG00000239264
Thioredoxin domain containing 5
Low tissue specificity
Detected in all
TXNDC9
ENSSSCG00000008181
ENSG00000115514
Thioredoxin domain containing 9
Low tissue specificity
Detected in all
TXNIP
ENSSSCG00000031262
ENSG00000265972
Thioredoxin-interacting protein
Low tissue specificity
Detected in all
TXNL1
ENSSSCG00000004537
ENSG00000091164
Thioredoxin-like protein 1
Low tissue specificity
Detected in all
TXNL4A
ENSSSCG00000005777
ENSG00000141759
Thioredoxin like 4A
Tissue enhanced
Detected in all
lens:
44.2
TXNL4B
ENSSSCG00000025218
ENSG00000140830
Thioredoxin like 4B
Low tissue specificity
Detected in all
TXNRD1
ENSSSCG00000000843
ENSG00000198431
Thioredoxin reductase 1, cytoplasmic
Tissue enhanced
Detected in all
large intestine:
57.5
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