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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMEM64
ENSSSCG00000040180
ENSG00000180694
Transmembrane protein 64
Tissue enhanced
Detected in all
epididymis:
60.4
TMEM65
ENSSSCG00000040731
ENSG00000164983
Transmembrane protein 65
Low tissue specificity
Detected in all
TMEM67
ENSSSCG00000006108
ENSG00000164953
Transmembrane protein 67
Low tissue specificity
Detected in all
TMEM68
ENSSSCG00000006252
ENSG00000167904
Transmembrane protein 68
Low tissue specificity
Detected in all
TMEM69
ENSSSCG00000034035
ENSG00000159596
Transmembrane protein 69
Low tissue specificity
Detected in all
TMEM70
ENSSSCG00000021628
ENSG00000175606
Transmembrane protein 70
Low tissue specificity
Detected in all
TMEM71
ENSSSCG00000005951
ENSG00000165071
Transmembrane protein 71
Low tissue specificity
Detected in all
TMEM74
ENSSSCG00000006031
ENSG00000164841
Transmembrane protein 74
Tissue enhanced
Detected in many
pituitary gland:
34.3
TMEM80
ENSSSCG00000012849
ENSG00000177042
Transmembrane protein 80
Low tissue specificity
Detected in all
TMEM86A
ENSSSCG00000013360
ENSG00000151117
Transmembrane protein 86A
Low tissue specificity
Detected in all
TMEM86B
ENSSSCG00000003302
ENSG00000180089
Lysoplasmalogenase
Group enriched
Detected in many
gallbladder:
29.8
liver:
69.9
TMEM87A
ENSSSCG00000004730
ENSG00000103978
Transmembrane protein 87A
Tissue enhanced
Detected in all
male glands:
93.7
TMEM87B
ENSSSCG00000026954
ENSG00000153214
Transmembrane protein 87B
Low tissue specificity
Detected in all
TMEM88
ENSSSCG00000037096
ENSG00000167874
Transmembrane protein 88
Low tissue specificity
Detected in many
TMEM88B
ENSSSCG00000034013
ENSG00000205116
Transmembrane protein 88B
Tissue enriched
Detected in all
brain:
47.0
TMEM8A
ENSSSCG00000007985
ENSG00000129925
Transmembrane protein 8A
Tissue enhanced
Detected in many
stomach:
68.3
TMEM8B
ENSSSCG00000005325
ENSG00000137103
Transmembrane protein 8B
Tissue enhanced
Detected in all
brain:
32.6
TMEM9
ENSSSCG00000027928
ENSG00000116857
Transmembrane protein 9
Low tissue specificity
Detected in many
TMEM92
ENSSSCG00000037168
ENSG00000167105
Transmembrane protein 92
Tissue enhanced
Detected in all
large intestine:
31.6
TMEM94
ENSSSCG00000034608
ENSG00000177728
Transmembrane protein 94
Low tissue specificity
Detected in all
TMEM97
ENSSSCG00000033123
ENSG00000109084
Transmembrane protein 97
Group enriched
Detected in all
liver:
59.1
ovary:
79.5
testis:
21.4
TMEM98
ENSSSCG00000017727
ENSG00000006042
Transmembrane protein 98
Tissue enhanced
Detected in all
mesothelial tissue:
54.6
TMEM9B
ENSSSCG00000014577
ENSG00000175348
TMEM9 domain family member B
Low tissue specificity
Detected in all
TMF1
ENSSSCG00000011510
ENSG00000144747
TATA element modulatory factor 1
Low tissue specificity
Detected in all
TMLHE
ENSSSCG00000038442
ENSG00000185973
Trimethyllysine hydroxylase, epsilon
Low tissue specificity
Detected in all
TMOD1
ENSSSCG00000023010
ENSG00000136842
Tropomodulin 1
Tissue enhanced
Detected in many
cervix:
45.0
lens:
104.7
skeletal muscle:
54.1
TMOD2
ENSSSCG00000004628
ENSG00000128872
Tropomodulin 2
Group enriched
Detected in many
brain:
53.7
lens:
33.7
pineal gland:
14.7
vagus nerve:
17.7
TMOD3
ENSSSCG00000004626
ENSG00000138594
Tropomodulin-3
Low tissue specificity
Detected in all
TMOD4
ENSSSCG00000006631
ENSG00000163157
Tropomodulin-4
Tissue enriched
Detected in some
skeletal muscle:
171.0
TMPO
ENSSSCG00000038487
ENSG00000120802
Thymopoietin
Tissue enhanced
Detected in all
lymphoid tissue:
61.1
TMPPE
ENSSSCG00000037371
ENSG00000188167
Transmembrane protein with metallophosphoesterase domain
Tissue enhanced
Detected in all
male glands:
42.8
TMPRSS11F
ENSSSCG00000008930
ENSG00000198092
Transmembrane serine protease 11F
Tissue enhanced
Detected in many
cornea:
15.4
TMPRSS12
ENSSSCG00000034783
ENSG00000186452
Transmembrane serine protease 12
Tissue enhanced
Detected in many
testis:
20.7
TMPRSS13
ENSSSCG00000038710
ENSG00000137747
Transmembrane serine protease 13
Tissue enhanced
Detected in many
cornea:
8.9
mouth:
16.8
TMPRSS4
ENSSSCG00000015086
ENSG00000137648
Transmembrane serine protease 4
Tissue enhanced
Detected in all
ductus deferens:
33.2
large intestine:
46.9
TMPRSS9
ENSSSCG00000028363
ENSG00000178297
Transmembrane serine protease 9
Group enriched
Detected in many
epididymis:
28.4
lymphoid tissue:
12.2
TMSB10
ENSSSCG00000008245
ENSG00000034510
Thymosin beta-10
Low tissue specificity
Detected in all
TMSB4X
ENSSSCG00000012119
ENSG00000205542
Thymosin beta-4 Hematopoietic system regulatory peptide
Low tissue specificity
Detected in all
TMTC1
ENSSSCG00000027447
ENSG00000133687
Transmembrane and tetratricopeptide repeat containing 1
Tissue enhanced
Detected in many
cartilage:
53.6
TMTC2
ENSSSCG00000024065
ENSG00000179104
Transmembrane and tetratricopeptide repeat containing 2
Low tissue specificity
Detected in many
TMTC3
ENSSSCG00000000927
ENSG00000139324
Transmembrane and tetratricopeptide repeat containing 3
Low tissue specificity
Detected in all
TMTC4
ENSSSCG00000009524
ENSG00000125247
Transmembrane and TPR repeat-containing protein 4
Low tissue specificity
Detected in all
TMUB1
ENSSSCG00000028266
ENSG00000164897
Transmembrane and ubiquitin-like domain-containing protein 1
Low tissue specificity
Detected in all
TMUB2
ENSSSCG00000022837
ENSG00000168591
Transmembrane and ubiquitin like domain containing 2
Low tissue specificity
Detected in all
TMX1
ENSSSCG00000038422
ENSG00000139921
Thioredoxin related transmembrane protein 1
Tissue enhanced
Detected in all
choroid plexus:
79.9
TMX2
ENSSSCG00000013176
ENSG00000213593
Thioredoxin related transmembrane protein 2
Low tissue specificity
Detected in all
TMX3
ENSSSCG00000004884
ENSG00000166479
Thioredoxin related transmembrane protein 3
Tissue enriched
Detected in all
lens:
60.1
TMX4
ENSSSCG00000021353
ENSG00000125827
Thioredoxin-related transmembrane protein 4 precursor
Low tissue specificity
Detected in all
TNC
ENSSSCG00000005494
ENSG00000041982
Tenascin precursor
Tissue enhanced
Detected in many
cartilage:
169.5
smooth muscle:
64.2
synovial tissue:
56.1
TNF
ENSSSCG00000001404
ENSG00000232810
Tumor necrosis factor Tumor necrosis factor, membrane form Intracellular domain 1 Intracellular domain 2 C-domain 1 C-domain 2 Tumor necrosis factor, soluble form
Low tissue specificity
Detected in all
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