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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TCF12
ENSSSCG00000004600
ENSG00000140262
Transcription factor 12
Tissue enhanced
Detected in all
lymphoid tissue:
84.4
TCF15
ENSSSCG00000036940
ENSG00000125878
Transcription factor 15
Low tissue specificity
Detected in all
TCF19
ENSSSCG00000001392
ENSG00000137310
Transcription factor 19
Tissue enhanced
Detected in many
lymphoid tissue:
11.0
TCF20
ENSSSCG00000032171
ENSG00000100207
Transcription factor 20
Low tissue specificity
Detected in all
TCF23
ENSSSCG00000027409
ENSG00000163792
Transcription factor 23
Tissue enhanced
Detected in all
cervix:
69.1
endometrium:
24.3
TCF25
ENSSSCG00000036102
ENSG00000141002
Transcription factor 25
Low tissue specificity
Detected in all
TCF3
ENSSSCG00000013437
ENSG00000071564
Transcription factor 3
Low tissue specificity
Detected in all
TCF4
ENSSSCG00000004535
ENSG00000196628
Transcription factor 4
Tissue enhanced
Detected in all
cartilage:
122.8
TCF7
ENSSSCG00000030680
ENSG00000081059
Transcription factor 7
Tissue enriched
Detected in many
lymphoid tissue:
169.9
TCF7L1
ENSSSCG00000008241
ENSG00000152284
Transcription factor 7 like 1
Low tissue specificity
Detected in all
TCF7L2
ENSSSCG00000010638
ENSG00000148737
Transcription factor 7 like 2
Low tissue specificity
Detected in all
TCFL5
ENSSSCG00000038631
ENSG00000101190
Transcription factor like 5
Group enriched
Detected in many
cartilage:
90.0
testis:
31.2
TCHP
ENSSSCG00000009926
ENSG00000139437
Trichoplein keratin filament binding
Low tissue specificity
Detected in all
TCIM
ENSSSCG00000032320
ENSG00000176907
Transcriptional and immune response regulator
Tissue enhanced
Detected in many
adipose tissue:
62.0
bone marrow:
73.2
TCIRG1
ENSSSCG00000012890
ENSG00000110719
T cell immune regulator 1, ATPase H+ transporting V0 subunit a3
Low tissue specificity
Detected in many
TCN1
ENSSSCG00000039252
ENSG00000134827
Transcobalamin 1
Group enriched
Detected in all
small intestine:
207.7
stomach:
156.3
TCN2
ENSSSCG00000010011
ENSG00000185339
Transcobalamin-2 precursor
Low tissue specificity
Detected in all
TCOF1
ENSSSCG00000014450
ENSG00000070814
Treacle ribosome biogenesis factor 1
Tissue enhanced
Detected in all
testis:
38.9
TCP1
ENSSSCG00000004048
ENSG00000120438
T-complex protein 1 subunit alpha
Low tissue specificity
Detected in all
TCP11L1
ENSSSCG00000030326
ENSG00000176148
T-complex 11 like 1
Low tissue specificity
Detected in all
TCP11L2
ENSSSCG00000024881
ENSG00000166046
T-complex 11 like 2
Low tissue specificity
Detected in all
TCTA
ENSSSCG00000037459
ENSG00000145022
T cell leukemia translocation altered
Low tissue specificity
Detected in all
TCTEX1D1
ENSSSCG00000031352
ENSG00000152760
Tctex1 domain-containing protein 1
Low tissue specificity
Detected in all
TCTN1
ENSSSCG00000009826
ENSG00000204852
Tectonic family member 1
Tissue enhanced
Detected in all
choroid plexus:
36.2
TCTN2
ENSSSCG00000009768
ENSG00000168778
Tectonic family member 2
Low tissue specificity
Detected in all
TCTN3
ENSSSCG00000010496
ENSG00000119977
Tectonic family member 3
Low tissue specificity
Detected in all
TDG
ENSSSCG00000000847
ENSG00000139372
Thymine DNA glycosylase
Low tissue specificity
Detected in all
TDGF1
ENSSSCG00000023395
ENSG00000241186
Teratocarcinoma-derived growth factor 1
Tissue enhanced
Detected in many
fallopian tube:
23.4
TDP1
ENSSSCG00000002431
ENSG00000042088
Tyrosyl-DNA phosphodiesterase 1
Low tissue specificity
Detected in all
TDP2
ENSSSCG00000001092
ENSG00000111802
Tyrosyl-DNA phosphodiesterase 2
Low tissue specificity
Detected in all
TDRD10
ENSSSCG00000006546
ENSG00000163239
Tudor domain-containing protein 10
Low tissue specificity
Detected in many
TDRD3
ENSSSCG00000009449
ENSG00000083544
Tudor domain containing 3
Low tissue specificity
Detected in all
TDRD7
ENSSSCG00000005364
ENSG00000196116
Tudor domain containing 7
Tissue enriched
Detected in many
lens:
392.7
TEAD1
ENSSSCG00000013399
ENSG00000187079
Transcriptional enhancer factor TEF-1
Tissue enhanced
Detected in all
skeletal muscle:
79.7
TEAD2
ENSSSCG00000025568
ENSG00000074219
TEA domain transcription factor 2
Low tissue specificity
Detected in all
TEAD3
ENSSSCG00000001544
ENSG00000007866
Transcriptional enhancer factor TEF-5
Low tissue specificity
Detected in all
TEAD4
ENSSSCG00000000736
ENSG00000197905
Transcriptional enhancer factor TEF-3
Tissue enhanced
Detected in many
mesothelial tissue:
35.0
skeletal muscle:
49.7
TEC
ENSSSCG00000008820
ENSG00000135605
Tec protein tyrosine kinase
Low tissue specificity
Detected in many
TECPR1
ENSSSCG00000007601
ENSG00000205356
Tectonin beta-propeller repeat containing 1
Tissue enhanced
Detected in many
salivary gland:
36.8
TECPR2
ENSSSCG00000002528
ENSG00000196663
Tectonin beta-propeller repeat containing 2
Low tissue specificity
Detected in all
TECR
ENSSSCG00000031299
ENSG00000099797
Trans-2,3-enoyl-CoA reductase
Low tissue specificity
Detected in all
TECRL
ENSSSCG00000024681
ENSG00000205678
Trans-2,3-enoyl-CoA reductase like
Group enriched
Detected in many
heart:
64.8
skeletal muscle:
21.9
TECTA
ENSSSCG00000023728
ENSG00000109927
Tectorin alpha
Low tissue specificity
Detected in all
TEDC1
ENSSSCG00000040089
ENSG00000185347
Tubulin epsilon and delta complex 1
Low tissue specificity
Detected in all
TEDC2
ENSSSCG00000008055
ENSG00000162062
Tubulin epsilon and delta complex 2
Tissue enhanced
Detected in all
epididymis:
26.3
TEDDM1
ENSSSCG00000015546
ENSG00000203730
Transmembrane epididymal protein 1
Tissue enriched
Detected in some
epididymis:
58.3
TEF
ENSSSCG00000035152
ENSG00000167074
TEF, PAR bZIP transcription factor
Low tissue specificity
Detected in all
TEFM
ENSSSCG00000017741
ENSG00000172171
Transcription elongation factor, mitochondrial
Low tissue specificity
Detected in all
TEK
ENSSSCG00000005122
ENSG00000120156
TEK receptor tyrosine kinase
Low tissue specificity
Detected in many
TEKT1
ENSSSCG00000017884
ENSG00000167858
Tektin 1
Tissue enhanced
Detected in all
fallopian tube:
43.2
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