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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TBC1D23
ENSSSCG00000030486
ENSG00000036054
TBC1 domain family member 23
Low tissue specificity
Detected in all
TBC1D25
ENSSSCG00000040599
ENSG00000068354
TBC1 domain family member 25
Low tissue specificity
Detected in all
TBC1D2B
ENSSSCG00000027477
ENSG00000167202
TBC1 domain family member 2B
Low tissue specificity
Detected in all
TBC1D30
ENSSSCG00000023788
ENSG00000111490
TBC1 domain family member 30
Low tissue specificity
Detected in all
TBC1D31
ENSSSCG00000005987
ENSG00000156787
TBC1 domain family member 31
Low tissue specificity
Detected in all
TBC1D32
ENSSSCG00000004242
ENSG00000146350
TBC1 domain family member 32
Tissue enhanced
Detected in all
brain:
30.9
TBC1D5
ENSSSCG00000011199
ENSG00000131374
TBC1 domain family member 5
Low tissue specificity
Detected in all
TBC1D7
ENSSSCG00000001053
ENSG00000145979
TBC1 domain family member 7
Low tissue specificity
Detected in all
TBC1D8
ENSSSCG00000008169
ENSG00000204634
TBC1 domain family member 8
Low tissue specificity
Detected in many
TBC1D8B
ENSSSCG00000022993
ENSG00000133138
TBC1 domain family member 8B
Tissue enhanced
Detected in many
male glands:
40.1
TBC1D9
ENSSSCG00000032741
ENSG00000109436
TBC1 domain family member 9
Low tissue specificity
Detected in all
TBC1D9B
ENSSSCG00000014014
ENSG00000197226
TBC1 domain family member 9B
Low tissue specificity
Detected in all
TBCA
ENSSSCG00000014100
ENSG00000171530
Tubulin folding cofactor A
Low tissue specificity
Detected in all
TBCB
ENSSSCG00000002926
ENSG00000105254
Tubulin-folding cofactor B
Low tissue specificity
Detected in all
TBCC
ENSSSCG00000026741
ENSG00000124659
Tubulin-specific chaperone C
Low tissue specificity
Detected in all
TBCCD1
ENSSSCG00000011797
ENSG00000113838
TBCC domain-containing protein 1
Low tissue specificity
Detected in all
TBCD
ENSSSCG00000017136
ENSG00000141556
Tubulin-specific chaperone D
Low tissue specificity
Detected in all
TBCK
ENSSSCG00000021784
ENSG00000145348
TBC1 domain containing kinase
Low tissue specificity
Detected in all
TBK1
ENSSSCG00000031103
ENSG00000183735
Serine/threonine-protein kinase TBK1
Low tissue specificity
Detected in all
TBKBP1
ENSSSCG00000017515
ENSG00000198933
TBK1 binding protein 1
Low tissue specificity
Detected in all
TBL1XR1
ENSSSCG00000011760
ENSG00000177565
Transducin beta like 1 X-linked receptor 1
Low tissue specificity
Detected in all
TBL2
ENSSSCG00000007709
ENSG00000106638
Transducin beta like 2
Low tissue specificity
Detected in all
TBL3
ENSSSCG00000037686
ENSG00000183751
Transducin beta like 3
Low tissue specificity
Detected in all
TBPL1
ENSSSCG00000022387
ENSG00000028839
TATA-box binding protein like 1
Low tissue specificity
Detected in all
TBPL2
ENSSSCG00000005059
ENSG00000182521
TATA-box binding protein like 2
Low tissue specificity
Detected in all
TBRG1
ENSSSCG00000025661
ENSG00000154144
Transforming growth factor beta regulator 1
Low tissue specificity
Detected in all
TBRG4
ENSSSCG00000016732
ENSG00000136270
Protein TBRG4
Low tissue specificity
Detected in all
TBX1
ENSSSCG00000037762
ENSG00000184058
T-box 1
Tissue enhanced
Detected in many
mouth:
31.0
skin:
39.2
TBX10
ENSSSCG00000034410
ENSG00000167800
T-box 10
Low tissue specificity
Detected in many
TBX15
ENSSSCG00000006725
ENSG00000092607
T-box 15
Tissue enhanced
Detected in many
cartilage:
46.3
mouth:
36.9
skeletal muscle:
74.2
synovial tissue:
31.8
TBX18
ENSSSCG00000004290
ENSG00000112837
T-box 18
Tissue enriched
Detected in many
cartilage:
52.6
TBX2
ENSSSCG00000027060
ENSG00000121068
T-box transcription factor TBX2
Tissue enhanced
Detected in many
male glands:
41.4
TBX21
ENSSSCG00000017517
ENSG00000073861
T-box transcription factor TBX21
Low tissue specificity
Detected in all
TBX22
ENSSSCG00000012449
ENSG00000122145
T-box 22
Low tissue specificity
Detected in all
TBX3
ENSSSCG00000009865
ENSG00000135111
T-box 3
Tissue enhanced
Detected in many
adrenal gland:
41.2
male glands:
87.6
thyroid gland:
38.6
TBX4
ENSSSCG00000022980
ENSG00000121075
T-box transcription factor TBX4
Tissue enhanced
Detected in many
cartilage:
44.1
lung:
21.4
penis:
14.5
urinary bladder:
19.8
TBX5
ENSSSCG00000009867
ENSG00000089225
T-box 5
Tissue enriched
Detected in some
heart:
65.3
TBX6
ENSSSCG00000034774
ENSG00000149922
T-box 6
Low tissue specificity
Detected in all
TBXAS1
ENSSSCG00000016504
ENSG00000059377
Thromboxane-A synthase
Low tissue specificity
Detected in many
TCAF1
ENSSSCG00000016453
ENSG00000198420
TRPM8 channel associated factor 1
Low tissue specificity
Detected in all
TCAIM
ENSSSCG00000031304
ENSG00000179152
T cell activation inhibitor, mitochondrial
Low tissue specificity
Detected in all
TCAP
ENSSSCG00000017500
ENSG00000173991
Telethonin
Tissue enhanced
Detected in some
heart:
177.0
male glands:
53.1
skeletal muscle:
200.9
TCEA1
ENSSSCG00000006261
ENSG00000187735
Transcription elongation factor A protein 1
Low tissue specificity
Detected in all
TCEA2
ENSSSCG00000036804
ENSG00000171703
Transcription elongation factor A2
Tissue enhanced
Detected in all
testis:
70.8
TCEA3
ENSSSCG00000032674
ENSG00000204219
Transcription elongation factor A3
Tissue enhanced
Detected in many
male glands:
79.9
skeletal muscle:
56.6
TCEAL1
ENSSSCG00000012532
ENSG00000172465
Transcription elongation factor A like 1
Low tissue specificity
Detected in all
TCEAL9
ENSSSCG00000012527
ENSG00000185222
Transcription elongation factor A like 9
Tissue enhanced
Detected in many
pineal gland:
21.2
pituitary gland:
35.7
TCEANC
ENSSSCG00000012122
ENSG00000176896
Transcription elongation factor A N-terminal and central domain containing
Tissue enhanced
Detected in all
lens:
33.3
TCEANC2
ENSSSCG00000021216
ENSG00000116205
Transcription elongation factor A N-terminal and central domain containing 2
Low tissue specificity
Detected in all
TCERG1
ENSSSCG00000014416
ENSG00000113649
Transcription elongation regulator 1
Low tissue specificity
Detected in all
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