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Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MMP11
ENSSSCG00000010071
ENSG00000099953
Matrix metallopeptidase 11
Low tissue specificity
Detected in all
MMP14
ENSSSCG00000002039
ENSG00000157227
Matrix metallopeptidase 14
Tissue enhanced
Detected in all
cervix:
107.7
ovary:
96.3
MMP15
ENSSSCG00000002806
ENSG00000102996
Matrix metallopeptidase 15
Tissue enhanced
Detected in all
stomach:
61.4
MMP16
ENSSSCG00000006132
ENSG00000156103
Matrix metallopeptidase 16
Tissue enhanced
Detected in many
cartilage:
46.5
MMP19
ENSSSCG00000000368
ENSG00000123342
Matrix metallopeptidase 19
Tissue enhanced
Detected in many
liver:
39.5
ovary:
32.3
MMP2
ENSSSCG00000002829
ENSG00000087245
72 kDa type IV collagenase precursor
Tissue enhanced
Detected in all
cervix:
147.1
MMP23B
ENSSSCG00000003351
ENSG00000189409
Matrix metallopeptidase 23B
Tissue enhanced
Detected in many
cartilage:
53.6
MMP24
ENSSSCG00000040160
ENSG00000125966
Matrix metallopeptidase 24
Tissue enhanced
Detected in all
adrenal gland:
36.5
brain:
39.8
MMP28
ENSSSCG00000034440
ENSG00000271447
Matrix metallopeptidase 28
Tissue enhanced
Detected in many
penis:
38.4
MMP3
ENSSSCG00000014985
ENSG00000149968
Interstitial collagenase 18 kDa interstitial collagenase
Tissue enhanced
Detected in many
small intestine:
36.8
upper respiratory system:
34.7
urinary bladder:
43.0
MMP8
ENSSSCG00000029675
ENSG00000118113
Matrix metallopeptidase 8
Tissue enriched
Detected in some
dura mater:
26.8
MMRN1
ENSSSCG00000009202
ENSG00000138722
Multimerin 1
Tissue enhanced
Detected in many
ovary:
21.2
MMRN2
ENSSSCG00000024048
ENSG00000173269
Multimerin 2
Tissue enhanced
Detected in many
penis:
56.2
MMS19
ENSSSCG00000010520
ENSG00000155229
MMS19 homolog, cytosolic iron-sulfur assembly component
Low tissue specificity
Detected in all
MMS22L
ENSSSCG00000004344
ENSG00000146263
MMS22 like, DNA repair protein
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
MN1
ENSSSCG00000009966
ENSG00000169184
MN1 proto-oncogene, transcriptional regulator
Tissue enhanced
Detected in many
cartilage:
60.6
skeletal muscle:
49.1
MNAT1
ENSSSCG00000005090
ENSG00000020426
CDK-activating kinase assembly factor MAT1
Low tissue specificity
Detected in all
MNDA
ENSSSCG00000037532
ENSG00000163563
Myeloid cell nuclear differentiation antigen
Low tissue specificity
Detected in all
MNS1
ENSSSCG00000004601
ENSG00000138587
Meiosis specific nuclear structural 1
Tissue enhanced
Detected in many
choroid plexus:
18.3
fallopian tube:
20.6
testis:
20.3
MNT
ENSSSCG00000037159
ENSG00000070444
MAX network transcriptional repressor
Low tissue specificity
Detected in all
MOB1A
ENSSSCG00000039221
ENSG00000114978
MOB kinase activator 1A
Low tissue specificity
Detected in all
MOB2
ENSSSCG00000037847
ENSG00000182208
MOB kinase activator 2
Low tissue specificity
Detected in all
MOB3A
ENSSSCG00000032366
ENSG00000172081
MOB kinase activator 3A
Low tissue specificity
Detected in all
MOB3C
ENSSSCG00000003897
ENSG00000142961
MOB kinase activator 3C
Low tissue specificity
Detected in many
MOBKL3
ENSSSCG00000016079
Mps one binder kinase activator-like 3
Low tissue specificity
Detected in all
MOCOS
ENSSSCG00000003744
ENSG00000075643
Molybdenum cofactor sulfurase
Tissue enhanced
Detected in all
epididymis:
29.0
MOCS2
ENSSSCG00000016888
ENSG00000164172
Molybdenum cofactor synthesis 2
Low tissue specificity
Detected in all
MOCS3
ENSSSCG00000007475
ENSG00000124217
Adenylyltransferase and sulfurtransferase MOCS3
Low tissue specificity
Detected in all
MOGS
ENSSSCG00000022786
ENSG00000115275
Mannosyl-oligosaccharide glucosidase
Low tissue specificity
Detected in all
MOK
ENSSSCG00000002531
ENSG00000080823
MOK protein kinase
Tissue enhanced
Detected in many
fallopian tube:
25.5
testis:
36.8
MON1A
ENSSSCG00000025791
ENSG00000164077
Vacuolar fusion protein MON1 homolog A
Low tissue specificity
Detected in all
MON1B
ENSSSCG00000002701
ENSG00000103111
MON1 homolog B, secretory trafficking associated
Low tissue specificity
Detected in all
MON2
ENSSSCG00000000458
ENSG00000061987
MON2 homolog, regulator of endosome-to-Golgi trafficking
Low tissue specificity
Detected in all
MORC2
ENSSSCG00000010016
ENSG00000133422
MORC family CW-type zinc finger 2
Low tissue specificity
Detected in all
MORC3
ENSSSCG00000012055
ENSG00000159256
MORC family CW-type zinc finger 3
Low tissue specificity
Detected in all
MORC4
ENSSSCG00000036091
ENSG00000133131
MORC family CW-type zinc finger 4
Low tissue specificity
Detected in all
MORF4L1
ENSSSCG00000001769
ENSG00000185787
Mortality factor 4 like 1
Low tissue specificity
Detected in all
MORF4L2
ENSSSCG00000012534
ENSG00000123562
Mortality factor 4 like 2
Low tissue specificity
Detected in all
MORN1
ENSSSCG00000028706
ENSG00000116151
MORN repeat containing 1
Tissue enhanced
Detected in many
testis:
21.0
MORN2
ENSSSCG00000008480
ENSG00000188010
MORN repeat containing 2
Tissue enhanced
Detected in all
choroid plexus:
73.2
testis:
66.9
MORN3
ENSSSCG00000009809
ENSG00000139714
MORN repeat-containing protein 3
Tissue enhanced
Detected in many
fallopian tube:
12.9
testis:
20.8
upper respiratory system:
24.9
MORN4
ENSSSCG00000036954
ENSG00000171160
MORN repeat containing 4
Tissue enhanced
Detected in all
brain:
31.0
MORN5
ENSSSCG00000005529
ENSG00000185681
MORN repeat containing 5
Low tissue specificity
Detected in all
MOS
ENSSSCG00000006248
ENSG00000172680
Proto-oncogene serine/threonine-protein kinase mos
Low tissue specificity
Detected in all
MOSMO
ENSSSCG00000031629
ENSG00000185716
Modulator of smoothened
Low tissue specificity
Detected in all
MOSPD2
ENSSSCG00000012131
ENSG00000130150
Motile sperm domain-containing protein 2
Tissue enhanced
Detected in all
lens:
33.6
MOSPD3
ENSSSCG00000023255
ENSG00000106330
Motile sperm domain-containing protein 3
Low tissue specificity
Detected in all
MOV10
ENSSSCG00000006776
ENSG00000155363
Mov10 RISC complex RNA helicase
Low tissue specificity
Detected in many
MPC1
ENSSSCG00000032916
ENSG00000060762
Mitochondrial pyruvate carrier 1
Low tissue specificity
Detected in all
MPDU1
ENSSSCG00000017955
ENSG00000129255
Mannose-P-dolichol utilization defect 1 protein
Low tissue specificity
Detected in all
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