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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MILR1
ENSSSCG00000032612
ENSG00000271605
Mast cell immunoglobulin like receptor 1
Low tissue specificity
Detected in all
MINDY1
ENSSSCG00000006642
ENSG00000143409
MINDY lysine 48 deubiquitinase 1
Low tissue specificity
Detected in all
MINDY3
ENSSSCG00000011045
ENSG00000148481
MINDY lysine 48 deubiquitinase 3
Tissue enhanced
Detected in all
lens:
86.6
MINDY4
ENSSSCG00000016674
ENSG00000106125
MINDY lysine 48 deubiquitinase 4
Low tissue specificity
Detected in all
MINK1
ENSSSCG00000017917
ENSG00000141503
Misshapen like kinase 1
Low tissue specificity
Detected in all
MINPP1
ENSSSCG00000010435
ENSG00000107789
Multiple inositol-polyphosphate phosphatase 1
Tissue enriched
Detected in all
lens:
60.4
MIOS
ENSSSCG00000015343
ENSG00000164654
WD repeat-containing protein mio
Tissue enhanced
Detected in all
choroid plexus:
45.3
MIPEP
ENSSSCG00000009290
ENSG00000027001
Mitochondrial intermediate peptidase
Low tissue specificity
Detected in all
MIPOL1
ENSSSCG00000039714
ENSG00000151338
Mirror-image polydactyly 1
Low tissue specificity
Detected in all
MIS12
ENSSSCG00000034958
ENSG00000167842
MIS12, kinetochore complex component
Low tissue specificity
Detected in all
MIS18BP1
ENSSSCG00000004999
ENSG00000129534
MIS18 binding protein 1
Low tissue specificity
Detected in all
MISP3
ENSSSCG00000013768
ENSG00000141854
Uncharacterized protein MISP3
Tissue enhanced
Detected in all
male glands:
55.7
MITD1
ENSSSCG00000008185
ENSG00000158411
Microtubule interacting and trafficking domain containing 1
Low tissue specificity
Detected in all
MITF
ENSSSCG00000011514
ENSG00000187098
Sus scrofa microphthalmia-associated transcription factor-like (LOC102167244), mRNA.
Tissue enhanced
Detected in all
cervix:
72.5
MKKS
ENSSSCG00000007064
ENSG00000125863
McKusick-Kaufman syndrome
Low tissue specificity
Detected in all
MKL1
ENSSSCG00000000075
ENSG00000196588
Megakaryoblastic leukemia (translocation) 1
Low tissue specificity
Detected in all
MKL2
ENSSSCG00000039171
ENSG00000186260
MKL1/myocardin like 2
Low tissue specificity
Detected in all
MKLN1
ENSSSCG00000016549
ENSG00000128585
Muskelin 1
Low tissue specificity
Detected in all
MKNK1
ENSSSCG00000003898
ENSG00000079277
MAP kinase-interacting serine/threonine-protein kinase 1
Low tissue specificity
Detected in all
MKNK2
ENSSSCG00000013448
ENSG00000099875
MAP kinase interacting serine/threonine kinase 2
Tissue enhanced
Detected in all
lens:
99.7
MKRN1
ENSSSCG00000016498
ENSG00000133606
Makorin ring finger protein 1
Tissue enhanced
Detected in all
testis:
96.3
MKRN2
ENSSSCG00000029877
ENSG00000075975
Makorin ring finger protein 2
Tissue enhanced
Detected in all
lens:
57.2
MKRN2OS
ENSSSCG00000011581
ENSG00000225526
MKRN2 opposite strand
Low tissue specificity
Detected in many
MKS1
ENSSSCG00000017635
ENSG00000011143
Meckel syndrome, type 1
Low tissue specificity
Detected in all
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MLEC
ENSSSCG00000009914
ENSG00000110917
Malectin
Tissue enhanced
Detected in all
male glands:
75.1
MLF1
ENSSSCG00000037461
ENSG00000178053
Myeloid leukemia factor 1
Tissue enhanced
Detected in many
choroid plexus:
51.9
heart:
51.4
skeletal muscle:
80.9
testis:
86.7
MLF2
ENSSSCG00000000690
ENSG00000089693
Myeloid leukemia factor 2
Low tissue specificity
Detected in all
MLH1
ENSSSCG00000024222
ENSG00000076242
DNA mismatch repair protein Mlh1
Low tissue specificity
Detected in all
MLH3
ENSSSCG00000002378
ENSG00000119684
MutL homolog 3
Low tissue specificity
Detected in all
MLIP
ENSSSCG00000001485
ENSG00000146147
Muscular LMNA interacting protein
Group enriched
Detected in some
heart:
106.4
skeletal muscle:
86.5
vagus nerve:
48.5
MLKL
ENSSSCG00000002716
ENSG00000168404
Mixed lineage kinase domain like pseudokinase
Low tissue specificity
Detected in all
MLLT1
ENSSSCG00000013534
ENSG00000130382
MLLT1, super elongation complex subunit
Low tissue specificity
Detected in all
MLLT10
ENSSSCG00000011085
ENSG00000078403
MLLT10, histone lysine methyltransferase DOT1L cofactor
Low tissue specificity
Detected in all
MLLT11
ENSSSCG00000030278
ENSG00000213190
Protein AF1q
Group enriched
Detected in many
brain:
62.9
pineal gland:
53.3
retina:
20.3
MLLT3
ENSSSCG00000005166
ENSG00000171843
MLLT3, super elongation complex subunit
Low tissue specificity
Detected in many
MLLT6
ENSSSCG00000032478
ENSG00000275023
MLLT6, PHD finger containing
Low tissue specificity
Detected in all
MLNR
ENSSSCG00000022064
ENSG00000102539
Motilin receptor
Low tissue specificity
Detected in many
MLPH
ENSSSCG00000032849
ENSG00000115648
Melanophilin
Tissue enhanced
Detected in many
esophagus:
60.9
male glands:
95.7
salivary gland:
81.4
stomach:
67.7
MLST8
ENSSSCG00000008044
ENSG00000167965
MTOR associated protein, LST8 homolog
Low tissue specificity
Detected in all
MLX
ENSSSCG00000017397
ENSG00000108788
MLX, MAX dimerization protein
Low tissue specificity
Detected in all
MLXIP
ENSSSCG00000009794
ENSG00000175727
MLX interacting protein
Low tissue specificity
Detected in all
MLXIPL
ENSSSCG00000007710
ENSG00000009950
MLX interacting protein like
Tissue enhanced
Detected in many
adipose tissue:
74.7
liver:
76.6
MMAA
ENSSSCG00000009039
ENSG00000151611
Methylmalonic aciduria (cobalamin deficiency) cblA type
Low tissue specificity
Detected in all
MMAB
ENSSSCG00000009932
ENSG00000139428
Methylmalonic aciduria (cobalamin deficiency) cblB type
Low tissue specificity
Detected in all
MMACHC
ENSSSCG00000037354
ENSG00000132763
Methylmalonic aciduria and homocystinuria type C protein
Low tissue specificity
Detected in all
MMADHC
ENSSSCG00000028646
ENSG00000168288
Methylmalonic aciduria and homocystinuria, cblD type
Tissue enhanced
Detected in all
lens:
37.7
MMD
ENSSSCG00000017605
ENSG00000108960
Monocyte to macrophage differentiation associated
Tissue enhanced
Detected in all
ovary:
43.0
MME
ENSSSCG00000011723
ENSG00000196549
Membrane metalloendopeptidase
Tissue enhanced
Detected in many
choroid plexus:
43.9
endometrium:
40.3
kidney:
60.8
ovary:
39.6
MMGT1
ENSSSCG00000025854
ENSG00000169446
Membrane magnesium transporter 1 precursor
Low tissue specificity
Detected in all
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