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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LEMD1
ENSSSCG00000015291
ENSG00000186007
LEM domain containing 1
Low tissue specificity
Detected in all
LEMD2
ENSSSCG00000001520
ENSG00000161904
LEM domain containing 2
Low tissue specificity
Detected in all
LEMD3
ENSSSCG00000000469
ENSG00000174106
LEM domain containing 3
Low tissue specificity
Detected in all
LENG1
ENSSSCG00000003265
ENSG00000105617
Leukocyte receptor cluster member 1
Low tissue specificity
Detected in all
LENG8
ENSSSCG00000030857
ENSG00000167615
Leukocyte receptor cluster member 8
Low tissue specificity
Detected in all
LENG9
ENSSSCG00000003269
ENSG00000275183
Leukocyte receptor cluster member 9
Low tissue specificity
Detected in all
LEO1
ENSSSCG00000004625
ENSG00000166477
LEO1 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
LEPROT
ENSSSCG00000003806
ENSG00000213625
Leptin receptor gene-related protein
Low tissue specificity
Detected in all
LEPROTL1
ENSSSCG00000038085
ENSG00000104660
Leptin receptor overlapping transcript like 1
Low tissue specificity
Detected in all
LETM1
ENSSSCG00000008675
ENSG00000168924
LETM1 and EF-hand domain-containing protein 1, mitochondrial
Low tissue specificity
Detected in all
LETM2
ENSSSCG00000015816
ENSG00000165046
Leucine zipper and EF-hand containing transmembrane protein 2
Tissue enhanced
Detected in all
brain:
32.1
LETMD1
ENSSSCG00000032096
ENSG00000050426
LETM1 domain containing 1
Low tissue specificity
Detected in all
LFNG
ENSSSCG00000007572
ENSG00000106003
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in all
male glands:
81.6
LGALS1
ENSSSCG00000033854
ENSG00000100097
Galectin-1
Low tissue specificity
Detected in all
LGALS12
ENSSSCG00000013056
ENSG00000133317
Galectin-12
Tissue enhanced
Detected in all
adipose tissue:
46.2
LGALS3
ENSSSCG00000005055
ENSG00000131981
Galectin-3
Tissue enhanced
Detected in many
large intestine:
168.2
lens:
152.6
LGALS3BP
ENSSSCG00000036383
ENSG00000108679
Galectin 3 binding protein
Low tissue specificity
Detected in all
LGALS8
ENSSSCG00000010146
ENSG00000116977
Galectin-8
Low tissue specificity
Detected in all
LGALSL
ENSSSCG00000030005
ENSG00000119862
Galectin like
Tissue enhanced
Detected in all
cornea:
62.3
LGI1
ENSSSCG00000010481
ENSG00000108231
Leucine rich glioma inactivated 1
Low tissue specificity
Detected in all
LGMN
ENSSSCG00000002452
ENSG00000100600
Legumain
Tissue enhanced
Detected in all
kidney:
124.7
synovial tissue:
131.5
LGR4
ENSSSCG00000013335
ENSG00000205213
Leucine rich repeat containing G protein-coupled receptor 4
Tissue enhanced
Detected in many
stomach:
54.0
LGSN
ENSSSCG00000004450
ENSG00000146166
Lengsin, lens protein with glutamine synthetase domain
Tissue enriched
Detected in single
lens:
570.2
LHFPL2
ENSSSCG00000028536
ENSG00000145685
Lipoma HMGIC fusion partner-like 2 protein
Tissue enhanced
Detected in all
ovary:
66.1
LHFPL6
ENSSSCG00000029855
ENSG00000183722
LHFPL tetraspan subfamily member 6
Tissue enhanced
Detected in all
cervix:
76.3
LHPP
ENSSSCG00000010735
ENSG00000107902
Phospholysine phosphohistidine inorganic pyrophosphate phosphatase
Low tissue specificity
Detected in all
LIAS
ENSSSCG00000029385
ENSG00000121897
Lipoyl synthase, mitochondrial
Low tissue specificity
Detected in all
LIFR
ENSSSCG00000016850
ENSG00000113594
LIF receptor alpha
Low tissue specificity
Detected in all
LIG1
ENSSSCG00000003128
ENSG00000105486
DNA ligase 1
Low tissue specificity
Detected in all
LIG3
ENSSSCG00000024770
ENSG00000005156
DNA ligase 3
Low tissue specificity
Detected in all
LIG4
ENSSSCG00000009540
ENSG00000174405
DNA ligase 4
Low tissue specificity
Detected in all
LIM2
ENSSSCG00000003232
ENSG00000105370
Lens intrinsic membrane protein 2
Tissue enriched
Detected in single
lens:
628.1
LIMA1
ENSSSCG00000032269
ENSG00000050405
LIM domain and actin-binding protein 1
Low tissue specificity
Detected in all
LIMCH1
ENSSSCG00000008799
ENSG00000064042
LIM and calponin homology domains 1
Tissue enhanced
Detected in all
vagus nerve:
77.2
LIMD1
ENSSSCG00000011313
ENSG00000144791
LIM domains containing 1
Low tissue specificity
Detected in all
LIMK1
ENSSSCG00000030378
ENSG00000106683
LIM domain kinase 1
Tissue enhanced
Detected in all
cartilage:
57.1
LIMK2
ENSSSCG00000010025
ENSG00000182541
LIM domain kinase 2
Low tissue specificity
Detected in all
LIMS2
ENSSSCG00000015862
ENSG00000072163
LIM zinc finger domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
121.2
LIN28A
ENSSSCG00000003557
Protein lin-28 homolog A
Tissue enhanced
Detected in many
skeletal muscle:
13.5
LIN52
ENSSSCG00000027564
ENSG00000205659
Protein lin-52 homolog
Low tissue specificity
Detected in all
LIN54
ENSSSCG00000009242
ENSG00000189308
Lin-54 DREAM MuvB core complex component
Low tissue specificity
Detected in all
LIN7A
ENSSSCG00000040348
ENSG00000111052
Lin-7 homolog A, crumbs cell polarity complex component
Tissue enhanced
Detected in all
testis:
45.9
LIN7B
ENSSSCG00000003157
ENSG00000104863
Protein lin-7 homolog B
Tissue enhanced
Detected in all
brain:
26.5
lens:
21.6
LIN7C
ENSSSCG00000022806
ENSG00000148943
Lin-7 homolog C, crumbs cell polarity complex component
Low tissue specificity
Detected in all
LINC00483
ENSSSCG00000017556
ENSG00000167117
Long intergenic non-protein coding RNA 483
Tissue enriched
Detected in many
small intestine:
44.9
LINGO4
ENSSSCG00000026259
ENSG00000213171
Leucine rich repeat and Ig domain containing 4
Tissue enriched
Detected in some
brain:
29.5
LINS1
ENSSSCG00000004820
ENSG00000140471
Lines homolog 1
Tissue enhanced
Detected in all
lens:
41.4
LIPA
ENSSSCG00000010450
ENSG00000107798
Lysosomal acid lipase/cholesteryl ester hydrolase precursor
Tissue enhanced
Detected in all
ovary:
84.6
LIPC
ENSSSCG00000004596
ENSG00000166035
Hepatic triacylglycerol lipase precursor
Group enriched
Detected in all
liver:
58.1
small intestine:
22.1
LIPE
ENSSSCG00000003018
ENSG00000079435
Lipase E, hormone sensitive type
Tissue enhanced
Detected in many
adipose tissue:
157.0
aorta:
40.5
bone marrow:
57.2
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