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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LAMB3
ENSSSCG00000015618
ENSG00000196878
Laminin subunit beta 3
Tissue enhanced
Detected in many
thyroid gland:
48.3
LAMB4
ENSSSCG00000032905
ENSG00000091128
Laminin subunit beta 4
Tissue enhanced
Detected in many
cornea:
7.2
epididymis:
7.9
skin:
11.4
LAMC1
ENSSSCG00000015555
ENSG00000135862
Laminin subunit gamma-1 precursor
Low tissue specificity
Detected in all
LAMP1
ENSSSCG00000009555
ENSG00000185896
Lysosome-associated membrane glycoprotein 1 precursor
Low tissue specificity
Detected in all
LAMP2
ENSSSCG00000012604
ENSG00000005893
Lysosome-associated membrane glycoprotein 2 isoform 1 precursor
Low tissue specificity
Detected in all
LAMTOR1
ENSSSCG00000014804
ENSG00000149357
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1
Low tissue specificity
Detected in all
LAMTOR2
ENSSSCG00000006499
ENSG00000116586
Ragulator complex protein LAMTOR2
Low tissue specificity
Detected in all
LAMTOR3
ENSSSCG00000009176
ENSG00000109270
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
Low tissue specificity
Detected in all
LAMTOR4
ENSSSCG00000007646
ENSG00000188186
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
Low tissue specificity
Detected in all
LANCL1
ENSSSCG00000016158
ENSG00000115365
LanC like 1
Tissue enhanced
Detected in all
brain:
39.9
LANCL2
ENSSSCG00000023801
ENSG00000132434
LanC like 2
Low tissue specificity
Detected in all
LANCL3
ENSSSCG00000037269
ENSG00000147036
LanC like 3
Tissue enhanced
Detected in many
brain:
13.2
stomach:
9.4
LAP3
ENSSSCG00000023604
ENSG00000002549
Leucine aminopeptidase 3
Tissue enhanced
Detected in all
lens:
115.7
LAPTM4A
ENSSSCG00000008602
ENSG00000068697
Lysosomal protein transmembrane 4 alpha
Low tissue specificity
Detected in all
LAPTM4B
ENSSSCG00000006083
ENSG00000104341
Lysosomal protein transmembrane 4 beta
Tissue enhanced
Detected in all
ovary:
92.8
retina:
106.6
LARP1
ENSSSCG00000017069
ENSG00000155506
La ribonucleoprotein domain family member 1
Low tissue specificity
Detected in all
LARP1B
ENSSSCG00000034280
ENSG00000138709
La ribonucleoprotein domain family member 1B
Tissue enhanced
Detected in all
liver:
44.3
testis:
67.6
LARP4
ENSSSCG00000028516
ENSG00000161813
La ribonucleoprotein domain family member 4
Tissue enhanced
Detected in all
lens:
74.1
LARP4B
ENSSSCG00000011162
ENSG00000107929
La ribonucleoprotein domain family member 4B
Low tissue specificity
Detected in all
LARP7
ENSSSCG00000009119
ENSG00000174720
La-related protein 7
Low tissue specificity
Detected in all
LARS
ENSSSCG00000014411
ENSG00000133706
Leucyl-tRNA synthetase
Low tissue specificity
Detected in all
LARS2
ENSSSCG00000011312
ENSG00000011376
Leucyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
LAS1L
ENSSSCG00000012366
ENSG00000001497
LAS1 like, ribosome biogenesis factor
Low tissue specificity
Detected in all
LASP1
ENSSSCG00000040642
ENSG00000002834
LIM and SH3 protein 1
Low tissue specificity
Detected in all
LAT
ENSSSCG00000007811
ENSG00000213658
Linker for activation of T cells
Tissue enriched
Detected in all
lymphoid tissue:
71.9
LATS1
ENSSSCG00000004106
ENSG00000131023
Large tumor suppressor kinase 1
Low tissue specificity
Detected in all
LATS2
ENSSSCG00000036326
ENSG00000150457
Serine/threonine-protein kinase LATS2
Low tissue specificity
Detected in all
LAX1
ENSSSCG00000033768
ENSG00000122188
Lymphocyte transmembrane adaptor 1
Tissue enriched
Detected in all
lymphoid tissue:
65.5
LBH
ENSSSCG00000040332
ENSG00000213626
Limb bud and heart development
Tissue enhanced
Detected in many
fallopian tube:
93.1
LBP
ENSSSCG00000028758
ENSG00000129988
Lipopolysaccharide-binding protein precursor
Tissue enhanced
Detected in all
liver:
65.0
upper respiratory system:
30.6
LBR
ENSSSCG00000032397
ENSG00000143815
Lamin B receptor
Tissue enhanced
Detected in all
lymphoid tissue:
40.7
LCA5
ENSSSCG00000004469
ENSG00000135338
LCA5, lebercilin
Tissue enhanced
Detected in many
choroid plexus:
63.5
fallopian tube:
23.4
LCK
ENSSSCG00000003608
ENSG00000182866
Tyrosine-protein kinase Lck
Tissue enriched
Detected in all
lymphoid tissue:
74.8
LCLAT1
ENSSSCG00000025901
ENSG00000172954
Lysocardiolipin acyltransferase 1
Tissue enhanced
Detected in all
male glands:
46.5
LCMT2
ENSSSCG00000004711
ENSG00000168806
Leucine carboxyl methyltransferase 2
Low tissue specificity
Detected in all
LCN15
ENSSSCG00000038233
ENSG00000177984
Lipocalin 15
Tissue enhanced
Detected in many
choroid plexus:
30.3
LCORL
ENSSSCG00000008748
ENSG00000178177
Ligand-dependent nuclear receptor corepressor-like protein
Low tissue specificity
Detected in all
LCP2
ENSSSCG00000017006
ENSG00000043462
Lymphocyte cytosolic protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
115.5
stomach:
43.9
LCTL
ENSSSCG00000004947
ENSG00000188501
Lactase like
Tissue enriched
Detected in single
lens:
232.6
LDAH
ENSSSCG00000025357
ENSG00000118961
Lipid droplet associated hydrolase
Low tissue specificity
Detected in all
LDB1
ENSSSCG00000010574
ENSG00000198728
LIM domain-binding protein 1
Low tissue specificity
Detected in all
LDHB
ENSSSCG00000000576
ENSG00000111716
Lactate dehydrogenase B
Tissue enhanced
Detected in all
heart:
173.9
LDHD
ENSSSCG00000002712
ENSG00000166816
Lactate dehydrogenase D
Tissue enhanced
Detected in many
adrenal gland:
61.0
LDLR
ENSSSCG00000028512
ENSG00000130164
Low-density lipoprotein receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
153.0
ovary:
76.4
LDLRAD3
ENSSSCG00000013294
ENSG00000179241
Low density lipoprotein receptor class A domain containing 3
Tissue enhanced
Detected in all
cartilage:
58.8
LDLRAD4
ENSSSCG00000027417
ENSG00000168675
Low density lipoprotein receptor class A domain containing 4
Low tissue specificity
Detected in all
LDLRAP1
ENSSSCG00000003549
ENSG00000157978
Low density lipoprotein receptor adaptor protein 1
Tissue enhanced
Detected in all
adrenal gland:
67.3
LDOC1
ENSSSCG00000034189
ENSG00000182195
LDOC1, regulator of NFKB signaling
Tissue enhanced
Detected in all
male glands:
90.8
LEAP2
ENSSSCG00000032490
ENSG00000164406
Liver-expressed antimicrobial peptide 2 precursor
Tissue enhanced
Detected in all
liver:
45.0
LEFTY2
ENSSSCG00000032299
Left-right determination factor 2 precursor
Tissue enhanced
Detected in some
brain:
7.6
testis:
16.5
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