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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MYSM1
ENSSSCG00000003830
ENSG00000162601
Myb like, SWIRM and MPN domains 1
Low tissue specificity
Detected in all
MZF1
ENSSSCG00000031562
ENSG00000099326
Myeloid zinc finger 1
Low tissue specificity
Detected in all
MZT1
ENSSSCG00000040073
ENSG00000204899
Mitotic spindle organizing protein 1
Low tissue specificity
Detected in all
N4BP1
ENSSSCG00000002841
ENSG00000102921
NEDD4 binding protein 1
Low tissue specificity
Detected in all
N4BP2
ENSSSCG00000008792
ENSG00000078177
NEDD4 binding protein 2
Low tissue specificity
Detected in all
N4BP2L2
ENSSSCG00000009341
ENSG00000244754
NEDD4 binding protein 2 like 2
Low tissue specificity
Detected in all
na
ENSSSCG00000000028
Tissue enhanced
Detected in many
lens:
18.8
testis:
45.5
na
ENSSSCG00000000071
Tissue enhanced
Detected in all
lens:
135.9
na
ENSSSCG00000000073
Tissue enhanced
Detected in many
epididymis:
13.6
liver:
13.8
na
ENSSSCG00000000081
ENSG00000176177
Tissue enhanced
Detected in all
testis:
32.3
na
ENSSSCG00000000089
Low tissue specificity
Detected in all
na
ENSSSCG00000000097
ENSG00000100216
Low tissue specificity
Detected in all
na
ENSSSCG00000000107
ENSG00000213923,ENSG00000283900
Low tissue specificity
Detected in all
na
ENSSSCG00000000144
Thioredoxin, mitochondrial
Low tissue specificity
Detected in all
na
ENSSSCG00000000148
Tissue enriched
Detected in all
lymphoid tissue:
51.8
na
ENSSSCG00000000185
ENSG00000181929
5'-AMP-activated protein kinase subunit gamma-1
Low tissue specificity
Detected in all
na
ENSSSCG00000000191
ENSG00000167548
Low tissue specificity
Detected in all
na
ENSSSCG00000000199
ENSG00000123352
Tissue enhanced
Detected in all
male glands:
58.9
na
ENSSSCG00000000207
Low tissue specificity
Detected in many
na
ENSSSCG00000000217
ENSG00000161800
Low tissue specificity
Detected in many
na
ENSSSCG00000000220
Low tissue specificity
Detected in many
na
ENSSSCG00000000273
ENSG00000205352
Proline-rich protein 13 isoform 2
Tissue enhanced
Detected in all
large intestine:
116.3
small intestine:
102.0
stomach:
168.8
na
ENSSSCG00000000278
ENSG00000170653,ENSG00000267281
Low tissue specificity
Detected in all
na
ENSSSCG00000000288
Heterogeneous nuclear ribonucleoprotein A1
Low tissue specificity
Detected in all
na
ENSSSCG00000000359
Low tissue specificity
Detected in all
na
ENSSSCG00000000365
ENSG00000123353
Low tissue specificity
Detected in all
na
ENSSSCG00000000367
Low tissue specificity
Detected in all
na
ENSSSCG00000000377
Low tissue specificity
Detected in all
na
ENSSSCG00000000394
ENSG00000144785,ENSG00000257727
Protein canopy homolog 2 precursor
Tissue enhanced
Detected in all
male glands:
100.1
na
ENSSSCG00000000405
ENSG00000110955
Tissue enhanced
Detected in all
heart:
131.8
skeletal muscle:
128.0
na
ENSSSCG00000000473
ENSG00000155957
Tissue enhanced
Detected in all
male glands:
49.8
na
ENSSSCG00000000483
ENSG00000111554
Low tissue specificity
Detected in all
na
ENSSSCG00000000484
Low tissue specificity
Detected in many
na
ENSSSCG00000000522
Nucleosome assembly protein 1-like 1
Low tissue specificity
Detected in all
na
ENSSSCG00000000635
ENSG00000111196
Low tissue specificity
Detected in all
na
ENSSSCG00000000636
Killer cell lectin-like receptor subfamily A, member 1
Low tissue specificity
Detected in many
na
ENSSSCG00000000638
Low tissue specificity
Detected in all
na
ENSSSCG00000000663
ENSG00000139187
Low tissue specificity
Detected in all
na
ENSSSCG00000000694
Glyceraldehyde-3-phosphate dehydrogenase
Group enriched
Detected in all
heart:
275.0
lens:
794.8
skeletal muscle:
1003.0
na
ENSSSCG00000000719
ENSG00000139180
Tissue enhanced
Detected in all
skeletal muscle:
62.7
na
ENSSSCG00000000734
ENSG00000110900
Low tissue specificity
Detected in all
na
ENSSSCG00000000744
Tissue enhanced
Detected in many
retina:
9.3
na
ENSSSCG00000000753
Low tissue specificity
Detected in all
na
ENSSSCG00000000759
Tissue enriched
Detected in many
lens:
87.5
na
ENSSSCG00000000812
Tissue enhanced
Detected in many
endometrium:
23.0
fallopian tube:
18.4
na
ENSSSCG00000000849
Endoplasmin precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000000887
Low tissue specificity
Detected in all
na
ENSSSCG00000000897
Low tissue specificity
Detected in many
na
ENSSSCG00000000905
ENSG00000184752
Tissue enhanced
Detected in all
lens:
108.2
na
ENSSSCG00000000908
Tissue enhanced
Detected in all
testis:
130.4
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