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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MTFMT
ENSSSCG00000004543
ENSG00000103707
Methionyl-tRNA formyltransferase, mitochondrial
Low tissue specificity
Detected in all
MTFP1
ENSSSCG00000010007
ENSG00000242114
Mitochondrial fission process 1
Low tissue specificity
Detected in all
MTFR1
ENSSSCG00000006219
ENSG00000066855
Mitochondrial fission regulator 1
Tissue enhanced
Detected in all
testis:
48.2
MTFR1L
ENSSSCG00000003553
ENSG00000117640
Mitochondrial fission regulator 1 like
Low tissue specificity
Detected in all
MTFR2
ENSSSCG00000004164
ENSG00000146410
Mitochondrial fission regulator 2
Low tissue specificity
Detected in all
MTG2
ENSSSCG00000037369
ENSG00000101181
Mitochondrial ribosome associated GTPase 2
Low tissue specificity
Detected in all
MTHFD1
ENSSSCG00000002269
ENSG00000100714
Methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
Tissue enhanced
Detected in all
liver:
47.6
MTHFD1L
ENSSSCG00000004092
ENSG00000120254
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
Tissue enhanced
Detected in many
epididymis:
39.7
lens:
35.0
MTHFD2
ENSSSCG00000008289
ENSG00000065911
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
Tissue enhanced
Detected in all
male glands:
39.3
ovary:
29.7
MTHFD2L
ENSSSCG00000008961
ENSG00000163738
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like
Low tissue specificity
Detected in many
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTHFSD
ENSSSCG00000002660
ENSG00000103248
Methenyltetrahydrofolate synthetase domain containing
Low tissue specificity
Detected in all
MTIF2
ENSSSCG00000008404
ENSG00000085760
Mitochondrial translational initiation factor 2
Low tissue specificity
Detected in all
MTIF3
ENSSSCG00000037313
ENSG00000122033
Mitochondrial translational initiation factor 3
Low tissue specificity
Detected in all
MTM1
ENSSSCG00000012742
ENSG00000171100
Myotubularin 1
Low tissue specificity
Detected in all
MTMR1
ENSSSCG00000012743
ENSG00000063601
Myotubularin related protein 1
Low tissue specificity
Detected in all
MTMR10
ENSSSCG00000004844
ENSG00000166912
Myotubularin related protein 10
Low tissue specificity
Detected in all
MTMR12
ENSSSCG00000031509
ENSG00000150712
Myotubularin related protein 12
Low tissue specificity
Detected in all
MTMR14
ENSSSCG00000011546
ENSG00000163719
Myotubularin related protein 14
Low tissue specificity
Detected in all
MTMR2
ENSSSCG00000014970
ENSG00000087053
Myotubularin related protein 2
Low tissue specificity
Detected in all
MTMR3
ENSSSCG00000009994
ENSG00000100330
Myotubularin related protein 3
Tissue enhanced
Detected in all
lens:
67.9
MTMR4
ENSSSCG00000017642
ENSG00000108389
Myotubularin related protein 4
Low tissue specificity
Detected in all
MTMR6
ENSSSCG00000035119
ENSG00000139505
Myotubularin related protein 6
Low tissue specificity
Detected in all
MTMR8
ENSSSCG00000023862
ENSG00000102043
Myotubularin related protein 8
Low tissue specificity
Detected in all
MTMR9
ENSSSCG00000035133
ENSG00000104643
Myotubularin related protein 9
Low tissue specificity
Detected in all
MTO1
ENSSSCG00000004487
ENSG00000135297
Mitochondrial tRNA translation optimization 1
Low tissue specificity
Detected in all
MTOR
ENSSSCG00000003413
ENSG00000198793
Mechanistic target of rapamycin kinase
Low tissue specificity
Detected in all
MTPAP
ENSSSCG00000011018
ENSG00000107951
Poly(A) RNA polymerase, mitochondrial
Low tissue specificity
Detected in all
MTPN
ENSSSCG00000039290
ENSG00000105887
Myotrophin
Tissue enhanced
Detected in all
lens:
94.6
MTR
ENSSSCG00000010143
ENSG00000116984
5-methyltetrahydrofolate-homocysteine methyltransferase
Low tissue specificity
Detected in all
MTREX
ENSSSCG00000016911
ENSG00000039123
Mtr4 exosome RNA helicase
Low tissue specificity
Detected in all
MTRF1
ENSSSCG00000009436
ENSG00000120662
Peptide chain release factor 1, mitochondrial
Low tissue specificity
Detected in all
MTRF1L
ENSSSCG00000004076
ENSG00000112031
Peptide chain release factor 1-like, mitochondrial
Low tissue specificity
Detected in all
MTRR
ENSSSCG00000017100
ENSG00000124275
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
Low tissue specificity
Detected in all
MTSS1
ENSSSCG00000005975
ENSG00000170873
MTSS1, I-BAR domain containing
Low tissue specificity
Detected in all
MTSS1L
ENSSSCG00000040037
ENSG00000132613
MTSS1L, I-BAR domain containing
Low tissue specificity
Detected in all
MTURN
ENSSSCG00000037158
ENSG00000180354
Maturin
Tissue enhanced
Detected in all
brain:
55.6
epididymis:
50.3
MTUS1
ENSSSCG00000040013
ENSG00000129422
Microtubule associated scaffold protein 1
Low tissue specificity
Detected in all
MTUS2
ENSSSCG00000025996
ENSG00000132938
Microtubule associated scaffold protein 2
Tissue enhanced
Detected in many
cornea:
18.9
heart:
34.6
smooth muscle:
32.0
MTX1
ENSSSCG00000006523
ENSG00000173171
Metaxin-1
Low tissue specificity
Detected in all
MTX2
ENSSSCG00000022222
ENSG00000128654
Metaxin-2
Low tissue specificity
Detected in all
MTX3
ENSSSCG00000014116
ENSG00000177034
Metaxin 3
Low tissue specificity
Detected in all
MUL1
ENSSSCG00000028045
ENSG00000090432
Mitochondrial E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
MUM1
ENSSSCG00000013426
ENSG00000160953
Melanoma associated antigen (mutated) 1
Low tissue specificity
Detected in all
MUM1L1
ENSSSCG00000012548
ENSG00000157502
MUM1 like 1
Tissue enhanced
Detected in all
epididymis:
57.4
MUS81
ENSSSCG00000012973
ENSG00000172732
MUS81 structure-specific endonuclease subunit
Low tissue specificity
Detected in all
MUT
ENSSSCG00000001732
ENSG00000146085
Methylmalonyl-CoA mutase, mitochondrial precursor
Tissue enhanced
Detected in all
liver:
61.9
MUTYH
ENSSSCG00000003919
ENSG00000132781
MutY DNA glycosylase
Low tissue specificity
Detected in all
MVB12A
ENSSSCG00000036568
ENSG00000141971
Multivesicular body subunit 12A
Low tissue specificity
Detected in all
MVB12B
ENSSSCG00000036926
ENSG00000196814
Multivesicular body subunit 12B
Tissue enhanced
Detected in all
lens:
78.6
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