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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GRASP
ENSSSCG00000000234
ENSG00000161835
General receptor for phosphoinositides 1 associated scaffold protein
Low tissue specificity
Detected in many
GRB10
ENSSSCG00000015631
ENSG00000106070
Growth factor receptor-bound protein 10
Low tissue specificity
Detected in all
GRB14
ENSSSCG00000015901
ENSG00000115290
Growth factor receptor bound protein 14
Tissue enhanced
Detected in many
adrenal gland:
78.9
liver:
34.4
testis:
29.8
GRB2
ENSSSCG00000017206
ENSG00000177885
Growth factor receptor-bound protein 2
Low tissue specificity
Detected in all
GRB7
ENSSSCG00000017495
ENSG00000141738
Growth factor receptor bound protein 7
Low tissue specificity
Detected in all
GREB1
ENSSSCG00000025483
ENSG00000196208
Growth regulation by estrogen in breast cancer 1
Tissue enhanced
Detected in many
epididymis:
21.3
ovary:
20.1
penis:
28.8
GREB1L
ENSSSCG00000003699
ENSG00000141449
Growth regulation by estrogen in breast cancer 1 like
Tissue enhanced
Detected in many
ductus deferens:
37.3
epididymis:
62.0
GRHL1
ENSSSCG00000026068
ENSG00000134317
Grainyhead like transcription factor 1
Tissue enhanced
Detected in many
mouth:
24.3
salivary gland:
28.2
skin:
42.7
GRHL2
ENSSSCG00000006060
ENSG00000083307
Grainyhead like transcription factor 2
Tissue enhanced
Detected in many
male glands:
51.1
GRHL3
ENSSSCG00000003539
ENSG00000158055
Grainyhead like transcription factor 3
Tissue enhanced
Detected in many
mouth:
38.4
urinary bladder:
24.1
GRHPR
ENSSSCG00000005349
ENSG00000137106
Glyoxylate and hydroxypyruvate reductase
Tissue enhanced
Detected in all
liver:
60.7
GRIA1
ENSSSCG00000022569
ENSG00000155511
Glutamate ionotropic receptor AMPA type subunit 1
Tissue enriched
Detected in some
brain:
64.7
GRIA4
ENSSSCG00000030565
ENSG00000152578
Glutamate ionotropic receptor AMPA type subunit 4
Tissue enhanced
Detected in many
brain:
46.4
epididymis:
33.5
retina:
20.2
GRID2IP
ENSSSCG00000037070
ENSG00000215045
Grid2 interacting protein
Tissue enriched
Detected in some
brain:
17.9
GRIK4
ENSSSCG00000015131
ENSG00000149403
Glutamate ionotropic receptor kainate type subunit 4
Tissue enhanced
Detected in many
brain:
16.4
male glands:
15.3
GRIK5
ENSSSCG00000003038
ENSG00000105737
Glutamate ionotropic receptor kainate type subunit 5
Tissue enhanced
Detected in many
testis:
30.5
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
GRIN2D
ENSSSCG00000003133
ENSG00000105464
Glutamate ionotropic receptor NMDA type subunit 2D
Tissue enhanced
Detected in some
brain:
10.5
GRIN3A
ENSSSCG00000005400
ENSG00000198785
Glutamate ionotropic receptor NMDA type subunit 3A
Tissue enhanced
Detected in many
brain:
13.1
GRIN3B
ENSSSCG00000029635
ENSG00000116032
Glutamate ionotropic receptor NMDA type subunit 3B
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.2
GRINA
ENSSSCG00000032796
ENSG00000178719
Glutamate ionotropic receptor NMDA type subunit associated protein 1
Tissue enhanced
Detected in all
testis:
99.3
GRIP1
ENSSSCG00000000478
ENSG00000155974
Glutamate receptor interacting protein 1
Low tissue specificity
Detected in many
GRIPAP1
ENSSSCG00000021106
ENSG00000068400
GRIP1 associated protein 1
Low tissue specificity
Detected in all
GRK2
ENSSSCG00000012918
ENSG00000173020
Beta-adrenergic receptor kinase 1
Low tissue specificity
Detected in all
GRK3
ENSSSCG00000009956
ENSG00000100077
G protein-coupled receptor kinase 3
Tissue enhanced
Detected in all
lymphoid tissue:
61.3
GRK4
ENSSSCG00000008694
ENSG00000125388
G protein-coupled receptor kinase 4
Tissue enriched
Detected in many
testis:
73.1
GRK5
ENSSSCG00000010683
ENSG00000198873
G protein-coupled receptor kinase 5
Tissue enriched
Detected in many
cartilage:
92.6
GRK6
ENSSSCG00000035028
ENSG00000198055
G protein-coupled receptor kinase 6
Tissue enriched
Detected in all
lens:
136.1
GRM2
ENSSSCG00000011423
ENSG00000164082
Glutamate metabotropic receptor 2
Tissue enhanced
Detected in all
brain:
18.2
GRM3
ENSSSCG00000015395
ENSG00000198822
Glutamate metabotropic receptor 3
Tissue enriched
Detected in some
brain:
25.4
GRM7
ENSSSCG00000023891
ENSG00000196277
Glutamate metabotropic receptor 7
Tissue enhanced
Detected in all
brain:
19.8
pineal gland:
48.5
GRN
ENSSSCG00000017355
ENSG00000030582
Granulins precursor
Low tissue specificity
Detected in all
GRPEL2
ENSSSCG00000014432
ENSG00000164284
GrpE protein homolog 2, mitochondrial
Low tissue specificity
Detected in all
GRPR
ENSSSCG00000012144
ENSG00000126010
Gastrin-releasing peptide receptor
Low tissue specificity
Detected in all
GRSF1
ENSSSCG00000008940
ENSG00000132463
G-rich RNA sequence binding factor 1
Low tissue specificity
Detected in all
GRTP1
ENSSSCG00000009554
ENSG00000139835
Growth hormone regulated TBC protein 1
Tissue enhanced
Detected in many
stomach:
40.1
GRWD1
ENSSSCG00000003134
ENSG00000105447
Glutamate rich WD repeat containing 1
Low tissue specificity
Detected in all
GRXCR1
ENSSSCG00000008804
ENSG00000215203
Glutaredoxin and cysteine rich domain containing 1
Tissue enriched
Detected in many
testis:
29.6
GRXCR2
ENSSSCG00000040306
ENSG00000204928
Glutaredoxin and cysteine rich domain containing 2
Low tissue specificity
Detected in all
GSDMD
ENSSSCG00000006955
ENSG00000104518
Gasdermin D
Low tissue specificity
Detected in all
GSDME
ENSSSCG00000016716
ENSG00000105928
Gasdermin E
Tissue enhanced
Detected in many
choroid plexus:
22.5
GSE1
ENSSSCG00000002664
ENSG00000131149
Gse1 coiled-coil protein
Tissue enhanced
Detected in all
lymphoid tissue:
79.7
GSG1L
ENSSSCG00000022785
ENSG00000169181
GSG1 like
Low tissue specificity
Detected in all
GSK3A
ENSSSCG00000003035
ENSG00000105723
Glycogen synthase kinase-3 alpha
Low tissue specificity
Detected in all
GSK3B
ENSSSCG00000011889
ENSG00000082701
Glycogen synthase kinase-3 beta
Low tissue specificity
Detected in all
GSN
ENSSSCG00000037508
ENSG00000148180
Gelsolin
Tissue enhanced
Detected in all
cartilage:
266.2
heart:
223.1
penis:
327.1
GSPT1
ENSSSCG00000021118
ENSG00000103342
G1 to S phase transition 1
Tissue enhanced
Detected in all
lens:
116.6
GSPT2
ENSSSCG00000012317
ENSG00000189369
G1 to S phase transition 2
Low tissue specificity
Detected in all
GSR
ENSSSCG00000015844
ENSG00000104687
Glutathione-disulfide reductase
Tissue enhanced
Detected in all
large intestine:
60.8
GSS
ENSSSCG00000007287
ENSG00000100983
Glutathione synthetase
Tissue enriched
Detected in all
lens:
109.2
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