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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MAK
ENSSSCG00000001042
ENSG00000111837
Male germ cell associated kinase
Tissue enhanced
Detected in many
retina:
90.6
testis:
31.4
MAK16
ENSSSCG00000036947
ENSG00000198042
Protein MAK16 homolog
Low tissue specificity
Detected in all
MAL2
ENSSSCG00000006003
ENSG00000147676
Protein MAL2
Tissue enhanced
Detected in many
brain:
38.7
MALSU1
ENSSSCG00000036722
ENSG00000156928
Mitochondrial assembly of ribosomal large subunit 1
Low tissue specificity
Detected in all
MALT1
ENSSSCG00000004917
ENSG00000172175
MALT1 paracaspase
Low tissue specificity
Detected in all
MAMDC2
ENSSSCG00000030655
ENSG00000165072
MAM domain-containing protein 2
Tissue enhanced
Detected in many
smooth muscle:
34.5
MAMDC4
ENSSSCG00000005832
ENSG00000177943
MAM domain containing 4
Low tissue specificity
Detected in all
MAML1
ENSSSCG00000014019
ENSG00000161021
Mastermind like transcriptional coactivator 1
Low tissue specificity
Detected in all
MAML2
ENSSSCG00000034879
ENSG00000184384
Mastermind like transcriptional coactivator 2
Low tissue specificity
Detected in all
MAMLD1
ENSSSCG00000012741
ENSG00000013619
Mastermind like domain containing 1
Tissue enhanced
Detected in many
epididymis:
55.4
MAMSTR
ENSSSCG00000003143
ENSG00000176909
MEF2 activating motif and SAP domain containing transcriptional regulator
Tissue enhanced
Detected in all
skeletal muscle:
44.9
MAN1A2
ENSSSCG00000006730
ENSG00000198162
Mannosidase alpha class 1A member 2
Low tissue specificity
Detected in all
MAN1C1
ENSSSCG00000023235
ENSG00000117643
Mannosidase alpha class 1C member 1
Tissue enhanced
Detected in all
liver:
46.0
ovary:
66.6
MAN2A1
ENSSSCG00000014195
ENSG00000112893
Mannosidase alpha class 2A member 1
Low tissue specificity
Detected in all
MAN2A2
ENSSSCG00000001819
ENSG00000196547
Mannosidase alpha class 2A member 2
Low tissue specificity
Detected in all
MAN2B2
ENSSSCG00000027178
ENSG00000013288
Epididymis-specific alpha-mannosidase precursor
Tissue enriched
Detected in single
epididymis:
415.8
MAN2C1
ENSSSCG00000001881
ENSG00000140400
Mannosidase alpha class 2C member 1
Low tissue specificity
Detected in all
MANBA
ENSSSCG00000009166
ENSG00000109323
Mannosidase beta
Low tissue specificity
Detected in all
MANEA
ENSSSCG00000035648
ENSG00000172469
Mannosidase endo-alpha
Low tissue specificity
Detected in all
MANF
ENSSSCG00000032914
ENSG00000145050
Mesencephalic astrocyte-derived neurotrophic factor precursor
Low tissue specificity
Detected in all
MANSC1
ENSSSCG00000040835
ENSG00000111261
MANSC domain containing 1
Tissue enhanced
Detected in all
male glands:
78.7
MANSC4
ENSSSCG00000000546
ENSG00000205693
MANSC domain containing 4
Low tissue specificity
Detected in all
MAOA
ENSSSCG00000012257
ENSG00000189221
Amine oxidase
Low tissue specificity
Detected in many
MAOB
ENSSSCG00000023215
ENSG00000069535
Amine oxidase
Tissue enhanced
Detected in many
liver:
102.0
ovary:
41.3
MAP10
ENSSSCG00000010167
ENSG00000212916
Microtubule associated protein 10
Low tissue specificity
Detected in all
MAP1A
ENSSSCG00000004705
ENSG00000166963
Microtubule associated protein 1A
Tissue enriched
Detected in many
brain:
71.4
MAP1B
ENSSSCG00000016974
ENSG00000131711
Microtubule associated protein 1B
Tissue enhanced
Detected in many
brain:
87.9
ovary:
44.6
MAP1LC3A
ENSSSCG00000007281
ENSG00000101460
Microtubule-associated proteins 1A/1B light chain 3A
Low tissue specificity
Detected in all
MAP1LC3B
ENSSSCG00000002655
ENSG00000140941
Microtubule-associated proteins 1A/1B light chain 3B
Low tissue specificity
Detected in all
MAP1LC3C
ENSSSCG00000034838
ENSG00000197769
Microtubule associated protein 1 light chain 3 gamma
Low tissue specificity
Detected in all
MAP1S
ENSSSCG00000013884
ENSG00000130479
Microtubule-associated protein 1S
Low tissue specificity
Detected in all
MAP2K1
ENSSSCG00000004943
ENSG00000169032
Dual specificity mitogen-activated protein kinase kinase 1
Tissue enhanced
Detected in all
brain:
54.6
MAP2K2
ENSSSCG00000027127
ENSG00000126934,ENSG00000230626
Dual specificity mitogen-activated protein kinase kinase 2
Low tissue specificity
Detected in all
MAP2K3
ENSSSCG00000034379
ENSG00000034152
Mitogen-activated protein kinase kinase 3
Low tissue specificity
Detected in all
MAP2K4
ENSSSCG00000018016
ENSG00000065559
Mitogen-activated protein kinase kinase 4
Tissue enhanced
Detected in all
brain:
34.3
MAP2K5
ENSSSCG00000004955
ENSG00000137764
Mitogen-activated protein kinase kinase 5
Low tissue specificity
Detected in all
MAP2K6
ENSSSCG00000017254
ENSG00000108984
Mitogen-activated protein kinase kinase 6
Tissue enhanced
Detected in all
liver:
36.4
MAP2K7
ENSSSCG00000013588
ENSG00000076984
Mitogen-activated protein kinase kinase 7
Tissue enhanced
Detected in all
brain:
76.2
MAP3K1
ENSSSCG00000016918
ENSG00000095015
Mitogen-activated protein kinase kinase kinase 1
Low tissue specificity
Detected in all
MAP3K10
ENSSSCG00000028036
ENSG00000130758
Mitogen-activated protein kinase kinase kinase 10
Tissue enhanced
Detected in all
brain:
32.3
MAP3K11
ENSSSCG00000037531
ENSG00000173327
Mitogen-activated protein kinase kinase kinase 11
Low tissue specificity
Detected in all
MAP3K12
ENSSSCG00000000275
ENSG00000139625
Mitogen-activated protein kinase kinase kinase 12
Low tissue specificity
Detected in all
MAP3K13
ENSSSCG00000011791
ENSG00000073803
Mitogen-activated protein kinase kinase kinase 13
Low tissue specificity
Detected in all
MAP3K14
ENSSSCG00000017330
ENSG00000006062
Mitogen-activated protein kinase kinase kinase 14
Low tissue specificity
Detected in all
MAP3K2
ENSSSCG00000030354
ENSG00000169967
Mitogen-activated protein kinase kinase kinase 2
Low tissue specificity
Detected in all
MAP3K20
ENSSSCG00000015960
ENSG00000091436
Mitogen-activated protein kinase kinase kinase 20
Tissue enhanced
Detected in all
skeletal muscle:
78.1
MAP3K21
ENSSSCG00000010164
ENSG00000143674
Mitogen-activated protein kinase kinase kinase 21
Low tissue specificity
Detected in all
MAP3K3
ENSSSCG00000024813
ENSG00000198909
Mitogen-activated protein kinase kinase kinase 3
Low tissue specificity
Detected in all
MAP3K4
ENSSSCG00000004037
ENSG00000085511
Mitogen-activated protein kinase kinase kinase 4
Low tissue specificity
Detected in all
MAP3K5
ENSSSCG00000026041
ENSG00000197442
Mitogen-activated protein kinase kinase kinase 5
Low tissue specificity
Detected in all
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