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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LYN
ENSSSCG00000006250
ENSG00000254087
LYN proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
47.7
LYNX1
ENSSSCG00000031724
ENSG00000180155
Ly6/neurotoxin 1
Tissue enhanced
Detected in many
brain:
43.6
heart:
43.9
LYPD1
ENSSSCG00000035102
ENSG00000150551
Ly6/PLAUR domain-containing protein 1 precursor
Tissue enhanced
Detected in many
brain:
33.3
thyroid gland:
15.2
LYPD4
ENSSSCG00000003044
ENSG00000273111
Ly6/PLAUR domain-containing protein 4 precursor
Tissue enriched
Detected in some
testis:
84.3
LYPD5
ENSSSCG00000003073
ENSG00000159871
LY6/PLAUR domain containing 5
Low tissue specificity
Detected in all
LYPLA2
ENSSSCG00000023191
ENSG00000011009
Lysophospholipase II
Low tissue specificity
Detected in all
LYPLAL1
ENSSSCG00000010817
ENSG00000143353
Lysophospholipase like 1
Tissue enriched
Detected in all
lens:
66.8
LYRM1
ENSSSCG00000007853
ENSG00000102897
LYR motif containing 1
Low tissue specificity
Detected in all
LYRM2
ENSSSCG00000004324
ENSG00000083099
LYR motif containing 2
Low tissue specificity
Detected in all
LYRM4
ENSSSCG00000031269
ENSG00000214113
LYR motif containing 4
Low tissue specificity
Detected in all
LYRM7
ENSSSCG00000033213
ENSG00000186687
LYR motif containing 7
Low tissue specificity
Detected in all
LYSMD1
ENSSSCG00000020965
ENSG00000163155
LysM and putative peptidoglycan-binding domain-containing protein 1
Low tissue specificity
Detected in all
LYSMD3
ENSSSCG00000024193
ENSG00000176018
LysM domain containing 3
Low tissue specificity
Detected in all
LYSMD4
ENSSSCG00000030487
ENSG00000183060
LysM domain containing 4
Low tissue specificity
Detected in all
LYST
ENSSSCG00000010151
ENSG00000143669
Lysosomal trafficking regulator
Low tissue specificity
Detected in all
LYVE1
ENSSSCG00000029886
ENSG00000133800
Lymphatic vessel endothelial hyaluronan receptor 1
Low tissue specificity
Detected in all
LZIC
ENSSSCG00000033257
ENSG00000162441
Leucine zipper and CTNNBIP1 domain containing
Low tissue specificity
Detected in all
LZTFL1
ENSSSCG00000011314
ENSG00000163818
Leucine zipper transcription factor like 1
Tissue enhanced
Detected in all
testis:
108.0
LZTR1
ENSSSCG00000010097
ENSG00000099949
Leucine zipper like transcription regulator 1
Low tissue specificity
Detected in all
LZTS2
ENSSSCG00000021798
ENSG00000107816
Leucine zipper tumor suppressor 2
Low tissue specificity
Detected in all
LZTS3
ENSSSCG00000007161
ENSG00000088899
Leucine zipper tumor suppressor family member 3
Tissue enhanced
Detected in all
brain:
44.5
M6PR
ENSSSCG00000040743
ENSG00000003056
Mannose-6-phosphate receptor, cation dependent
Low tissue specificity
Detected in all
MAATS1
ENSSSCG00000011892
ENSG00000183833
MYCBP associated and testis expressed 1
Tissue enhanced
Detected in all
choroid plexus:
20.4
fallopian tube:
28.9
MAB21L1
ENSSSCG00000009351
ENSG00000180660
Mab-21 like 1
Tissue enhanced
Detected in many
lens:
45.0
retina:
44.9
MAB21L2
ENSSSCG00000009022
ENSG00000181541
Mab-21 like 2
Tissue enhanced
Detected in all
smooth muscle:
43.5
MAB21L3
ENSSSCG00000006742
ENSG00000173212
Mab-21 like 3
Tissue enhanced
Detected in all
liver:
32.8
MACC1
ENSSSCG00000024802
ENSG00000183742
MACC1, MET transcriptional regulator
Low tissue specificity
Detected in many
MACF1
ENSSSCG00000003654
ENSG00000127603
Microtubule-actin crosslinking factor 1
Low tissue specificity
Detected in all
MACO1
ENSSSCG00000030682
ENSG00000204178
Macoilin
Low tissue specificity
Detected in all
MACROD1
ENSSSCG00000013043
ENSG00000133315
O-acetyl-ADP-ribose deacetylase MACROD1
Group enriched
Detected in many
heart:
46.2
skeletal muscle:
149.0
MAD1L1
ENSSSCG00000038766
ENSG00000002822
Mitotic arrest deficient 1 like 1
Low tissue specificity
Detected in all
MAD2L1
ENSSSCG00000036256
ENSG00000164109
Mitotic arrest deficient 2 like 1
Low tissue specificity
Detected in all
MAD2L1BP
ENSSSCG00000016346
ENSG00000124688
MAD2L1 binding protein
Low tissue specificity
Detected in all
MAD2L2
ENSSSCG00000003419
ENSG00000116670
Mitotic arrest deficient 2 like 2
Tissue enhanced
Detected in all
testis:
102.4
MADD
ENSSSCG00000013235
ENSG00000110514
MAP kinase activating death domain
Low tissue specificity
Detected in all
MAEA
ENSSSCG00000032304
ENSG00000090316
Macrophage erythroblast attacher
Low tissue specificity
Detected in all
MAF
ENSSSCG00000040607
ENSG00000178573
MAF bZIP transcription factor
Tissue enhanced
Detected in all
lens:
134.2
MAF1
ENSSSCG00000005915
ENSG00000179632
MAF1 homolog, negative regulator of RNA polymerase III
Low tissue specificity
Detected in all
MAFB
ENSSSCG00000032251
ENSG00000204103
MAF bZIP transcription factor B
Tissue enhanced
Detected in many
lymphoid tissue:
125.0
synovial tissue:
119.6
MAFG
ENSSSCG00000035253
ENSG00000197063
MAF bZIP transcription factor G
Tissue enhanced
Detected in all
lens:
47.7
MAFK
ENSSSCG00000007559
ENSG00000198517
MAF bZIP transcription factor K
Low tissue specificity
Detected in all
MAGED1
ENSSSCG00000012318
ENSG00000179222
Melanoma-associated antigen D1
Low tissue specificity
Detected in all
MAGEF1
ENSSSCG00000011787
ENSG00000177383
MAGE family member F1
Low tissue specificity
Detected in all
MAGI1
ENSSSCG00000011497
ENSG00000151276
Membrane associated guanylate kinase, WW and PDZ domain containing 1
Low tissue specificity
Detected in all
MAGI2
ENSSSCG00000031780
ENSG00000187391
Membrane associated guanylate kinase, WW and PDZ domain containing 2
Tissue enhanced
Detected in many
brain:
31.7
lens:
39.6
MAGI3
ENSSSCG00000006767
ENSG00000081026
Membrane associated guanylate kinase, WW and PDZ domain containing 3
Low tissue specificity
Detected in all
MAGIX
ENSSSCG00000012295
ENSG00000269313
MAGI family member, X-linked
Low tissue specificity
Detected in all
MAGT1
ENSSSCG00000012435
ENSG00000102158
Magnesium transporter 1
Low tissue specificity
Detected in all
MAIP1
ENSSSCG00000036676
ENSG00000162972
Matrix AAA peptidase interacting protein 1
Low tissue specificity
Detected in all
MAJIN
ENSSSCG00000040674
ENSG00000168070
Membrane anchored junction protein
Tissue enriched
Detected in some
testis:
30.2
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