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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM105A
ENSSSCG00000016782
ENSG00000145569
Family with sequence similarity 105 member A
Tissue enhanced
Detected in many
epididymis:
59.1
FAM107A
ENSSSCG00000033189
ENSG00000168309
Protein FAM107A
Tissue enhanced
Detected in all
choroid plexus:
97.7
FAM109A
ENSSSCG00000009832
ENSG00000198324
Family with sequence similarity 109 member A
Tissue enhanced
Detected in all
ovary:
32.3
FAM109B
ENSSSCG00000038492
ENSG00000177096
Family with sequence similarity 109 member B
Low tissue specificity
Detected in all
FAM110A
ENSSSCG00000007200
ENSG00000125898
Family with sequence similarity 110 member A
Tissue enhanced
Detected in many
cornea:
26.5
FAM110C
ENSSSCG00000032221
ENSG00000184731
Family with sequence similarity 110 member C
Tissue enhanced
Detected in many
male glands:
34.8
FAM110D
ENSSSCG00000031074
ENSG00000197245
Protein FAM110D isoform 1
Tissue enhanced
Detected in many
mesothelial tissue:
39.4
FAM111A
ENSSSCG00000033703
ENSG00000166801
Family with sequence similarity 111 member A
Low tissue specificity
Detected in many
FAM111B
ENSSSCG00000013147
ENSG00000189057
Family with sequence similarity 111 member B
Low tissue specificity
Detected in many
FAM114A1
ENSSSCG00000008785
ENSG00000197712
Family with sequence similarity 114 member A1
Tissue enhanced
Detected in all
male glands:
109.8
FAM114A2
ENSSSCG00000017073
ENSG00000055147
Family with sequence similarity 114 member A2
Low tissue specificity
Detected in all
FAM117A
ENSSSCG00000017551
ENSG00000121104
Family with sequence similarity 117 member A
Low tissue specificity
Detected in all
FAM117B
ENSSSCG00000016114
ENSG00000138439
Family with sequence similarity 117 member B
Low tissue specificity
Detected in all
FAM118A
ENSSSCG00000000014
ENSG00000100376
Family with sequence similarity 118 member A
Low tissue specificity
Detected in all
FAM118B
ENSSSCG00000025806
ENSG00000197798
Family with sequence similarity 118 member B
Low tissue specificity
Detected in all
FAM120A
ENSSSCG00000008079
ENSG00000048828
Family with sequence similarity 120A
Low tissue specificity
Detected in all
FAM120B
ENSSSCG00000029697
ENSG00000112584
Family with sequence similarity 120B
Low tissue specificity
Detected in all
FAM120C
ENSSSCG00000035822
ENSG00000184083
Family with sequence similarity 120C
Low tissue specificity
Detected in all
FAM122B
ENSSSCG00000012685
ENSG00000156504
Family with sequence similarity 122B
Low tissue specificity
Detected in all
FAM124A
ENSSSCG00000029598
ENSG00000150510
Family with sequence similarity 124 member A
Tissue enhanced
Detected in all
lens:
40.0
FAM126A
ENSSSCG00000015386
ENSG00000122591
Family with sequence similarity 126 member A
Low tissue specificity
Detected in all
FAM126B
ENSSSCG00000036339
ENSG00000155744
Family with sequence similarity 126 member B
Tissue enhanced
Detected in all
brain:
41.8
FAM129A
ENSSSCG00000015567
ENSG00000135842
Protein Niban
Tissue enhanced
Detected in many
male glands:
84.4
salivary gland:
83.6
smooth muscle:
60.1
FAM129B
ENSSSCG00000005614
ENSG00000136830
Family with sequence similarity 129 member B
Low tissue specificity
Detected in many
FAM129C
ENSSSCG00000013882
ENSG00000167483
Family with sequence similarity 129 member C
Low tissue specificity
Detected in all
FAM131A
ENSSSCG00000028372
ENSG00000175182
Protein FAM131A
Tissue enriched
Detected in many
brain:
35.6
FAM131C
ENSSSCG00000003470
ENSG00000185519
Family with sequence similarity 131 member C
Tissue enhanced
Detected in all
stomach:
49.5
FAM133A
ENSSSCG00000031033
ENSG00000179083
Family with sequence similarity 133 member A
Tissue enhanced
Detected in many
brain:
14.6
pituitary gland:
13.3
FAM135A
ENSSSCG00000004275
ENSG00000082269
Family with sequence similarity 135 member A
Low tissue specificity
Detected in all
FAM13B
ENSSSCG00000029125
ENSG00000031003
Family with sequence similarity 13 member B
Low tissue specificity
Detected in all
FAM149A
ENSSSCG00000015802
ENSG00000109794
Family with sequence similarity 149 member A
Tissue enriched
Detected in many
lens:
125.8
FAM149B1
ENSSSCG00000026898
ENSG00000138286
Family with sequence similarity 149 member B1
Low tissue specificity
Detected in all
FAM151B
ENSSSCG00000014123
ENSG00000152380
Family with sequence similarity 151 member B
Low tissue specificity
Detected in all
FAM155B
ENSSSCG00000012386
ENSG00000130054
Family with sequence similarity 155 member B
Tissue enhanced
Detected in all
heart:
38.3
FAM160A1
ENSSSCG00000020717
ENSG00000164142
Family with sequence similarity 160 member A1
Low tissue specificity
Detected in all
FAM160A2
ENSSSCG00000014632
ENSG00000051009
Family with sequence similarity 160 member A2
Low tissue specificity
Detected in all
FAM160B1
ENSSSCG00000010652
ENSG00000151553
Family with sequence similarity 160 member B1
Low tissue specificity
Detected in all
FAM160B2
ENSSSCG00000009614
ENSG00000158863
Family with sequence similarity 160 member B2
Low tissue specificity
Detected in all
FAM161A
ENSSSCG00000008378
ENSG00000170264
Family with sequence similarity 161 member A
Tissue enhanced
Detected in all
testis:
68.3
FAM161B
ENSSSCG00000002353
ENSG00000156050
Family with sequence similarity 161 member B
Tissue enhanced
Detected in all
lens:
45.4
FAM162A
ENSSSCG00000026990
ENSG00000114023
Protein FAM162A
Tissue enhanced
Detected in all
skeletal muscle:
58.8
FAM162B
ENSSSCG00000038522
ENSG00000183807
Family with sequence similarity 162 member B
Tissue enhanced
Detected in many
pituitary gland:
29.7
salivary gland:
30.9
FAM163A
ENSSSCG00000033352
ENSG00000143340
Family with sequence similarity 163 member A
Tissue enhanced
Detected in all
adrenal gland:
38.7
FAM168A
ENSSSCG00000039996
ENSG00000054965
Family with sequence similarity 168 member A
Tissue enhanced
Detected in all
brain:
41.2
FAM168B
ENSSSCG00000033126
ENSG00000152102
Family with sequence similarity 168 member B
Low tissue specificity
Detected in all
FAM169A
ENSSSCG00000014076
ENSG00000198780
Family with sequence similarity 169 member A
Tissue enhanced
Detected in many
cornea:
32.5
lens:
32.1
pineal gland:
28.7
pituitary gland:
27.6
retina:
49.7
FAM171A1
ENSSSCG00000011047
ENSG00000148468
Family with sequence similarity 171 member A1
Low tissue specificity
Detected in all
FAM172A
ENSSSCG00000027608
ENSG00000113391
Family with sequence similarity 172 member A
Low tissue specificity
Detected in all
FAM173A
ENSSSCG00000008004
ENSG00000103254
Family with sequence similarity 173 member A
Low tissue specificity
Detected in all
FAM173B
ENSSSCG00000036387
ENSG00000150756
Family with sequence similarity 173 member B
Low tissue specificity
Detected in all
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