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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EIF2S2
ENSSSCG00000026617
ENSG00000125977
Eukaryotic translation initiation factor 2 subunit beta
Low tissue specificity
Detected in all
EIF3A
ENSSSCG00000010679
ENSG00000107581
Eukaryotic translation initiation factor 3 subunit A
Low tissue specificity
Detected in all
EIF3B
ENSSSCG00000039390
ENSG00000106263
Eukaryotic translation initiation factor 3 subunit B
Low tissue specificity
Detected in all
EIF3D
ENSSSCG00000000141
ENSG00000100353
Eukaryotic translation initiation factor 3 subunit D
Low tissue specificity
Detected in all
EIF3E
ENSSSCG00000006033
ENSG00000104408
Eukaryotic translation initiation factor 3 subunit E
Low tissue specificity
Detected in all
EIF3F
ENSSSCG00000039647
ENSG00000175390
Eukaryotic translation initiation factor 3 subunit F
Low tissue specificity
Detected in all
EIF3G
ENSSSCG00000013661
ENSG00000130811
Eukaryotic translation initiation factor 3 subunit G
Low tissue specificity
Detected in all
EIF3H
ENSSSCG00000006016
ENSG00000147677
Eukaryotic translation initiation factor 3 subunit H
Low tissue specificity
Detected in all
EIF3I
ENSSSCG00000003612
ENSG00000084623
Eukaryotic translation initiation factor 3 subunit I
Low tissue specificity
Detected in all
EIF3J
ENSSSCG00000004691
ENSG00000104131
Eukaryotic translation initiation factor 3 subunit J
Low tissue specificity
Detected in all
EIF3K
ENSSSCG00000002963
ENSG00000178982
Eukaryotic translation initiation factor 3 subunit K
Low tissue specificity
Detected in all
EIF3L
ENSSSCG00000000119
ENSG00000100129
Eukaryotic translation initiation factor 3 subunit L
Low tissue specificity
Detected in all
EIF4A1
ENSSSCG00000017957
ENSG00000161960
Eukaryotic initiation factor 4A-I
Low tissue specificity
Detected in all
EIF4A3
ENSSSCG00000017155
ENSG00000141543
Eukaryotic initiation factor 4A-III Eukaryotic initiation factor 4A-III, N-terminally processed
Low tissue specificity
Detected in all
EIF4E1B
ENSSSCG00000014052
ENSG00000175766
Eukaryotic translation initiation factor 4E family member 1B
Tissue enhanced
Detected in many
cartilage:
6.7
salivary gland:
10.2
EIF4E2
ENSSSCG00000038466
ENSG00000135930
Eukaryotic translation initiation factor 4E type 2
Low tissue specificity
Detected in all
EIF4E3
ENSSSCG00000011516
ENSG00000163412
Eukaryotic translation initiation factor 4E family member 3
Tissue enhanced
Detected in all
brain:
53.5
EIF4EBP1
ENSSSCG00000022301
ENSG00000187840
Eukaryotic translation initiation factor 4E-binding protein 1
Low tissue specificity
Detected in all
EIF4EBP2
ENSSSCG00000034444
ENSG00000148730
Eukaryotic translation initiation factor 4E binding protein 2
Low tissue specificity
Detected in all
EIF4EBP3
ENSSSCG00000020835
ENSG00000243056
Eukaryotic translation initiation factor 4E-binding protein 3
Tissue enriched
Detected in all
male glands:
143.5
EIF4ENIF1
ENSSSCG00000010030
ENSG00000184708
Eukaryotic translation initiation factor 4E nuclear import factor 1
Low tissue specificity
Detected in all
EIF4G1
ENSSSCG00000030255
ENSG00000114867
Eukaryotic translation initiation factor 4 gamma 1
Low tissue specificity
Detected in all
EIF4G3
ENSSSCG00000003512
ENSG00000075151
Eukaryotic translation initiation factor 4 gamma 3
Low tissue specificity
Detected in all
EIF4H
ENSSSCG00000025966
ENSG00000106682
Eukaryotic translation initiation factor 4H isoform 1
Low tissue specificity
Detected in all
EIF5A
ENSSSCG00000038359
ENSG00000132507
Eukaryotic translation initiation factor 5A
Low tissue specificity
Detected in all
EIF5A2
ENSSSCG00000040946
ENSG00000163577
Eukaryotic translation initiation factor 5A2
Tissue enhanced
Detected in many
brain:
21.4
EIF5B
ENSSSCG00000008180
ENSG00000158417
Eukaryotic translation initiation factor 5B
Low tissue specificity
Detected in all
EIPR1
ENSSSCG00000028755
ENSG00000032389
Protein TSSC1
Low tissue specificity
Detected in all
ELAC2
ENSSSCG00000028465
ENSG00000006744
Zinc phosphodiesterase ELAC protein 2
Low tissue specificity
Detected in all
ELANE
ENSSSCG00000029130
ENSG00000197561
Elastase, neutrophil expressed
Tissue enriched
Detected in many
bone marrow:
70.9
ELAVL1
ENSSSCG00000013592
ENSG00000066044
ELAV-like protein 1
Low tissue specificity
Detected in all
ELAVL2
ENSSSCG00000005130
ENSG00000107105
ELAV like RNA binding protein 2
Group enriched
Detected in some
brain:
36.2
large intestine:
11.5
retina:
9.4
testis:
13.6
ELF1
ENSSSCG00000009440
ENSG00000120690
E74 like ETS transcription factor 1
Low tissue specificity
Detected in all
ELF2
ENSSSCG00000029920
ENSG00000109381
E74 like ETS transcription factor 2
Low tissue specificity
Detected in all
ELF3
ENSSSCG00000010922
ENSG00000163435
E74 like ETS transcription factor 3
Tissue enhanced
Detected in many
large intestine:
35.4
stomach:
54.7
upper respiratory system:
50.1
urinary bladder:
61.1
ELF4
ENSSSCG00000012656
ENSG00000102034
E74 like ETS transcription factor 4
Tissue enhanced
Detected in many
stomach:
41.7
ELF5
ENSSSCG00000013301
ENSG00000135374
ETS-related transcription factor Elf-5
Tissue enriched
Detected in all
male glands:
114.9
ELK1
ENSSSCG00000012279
ENSG00000126767
ELK1, ETS transcription factor
Low tissue specificity
Detected in all
ELK3
ENSSSCG00000023803
ENSG00000111145
ELK3, ETS transcription factor
Low tissue specificity
Detected in many
ELK4
ENSSSCG00000025182
ENSG00000158711
ELK4, ETS transcription factor
Low tissue specificity
Detected in all
ELL
ENSSSCG00000040181
ENSG00000105656
Elongation factor for RNA polymerase II
Low tissue specificity
Detected in all
ELL2
ENSSSCG00000014168
ENSG00000118985
Elongation factor for RNA polymerase II 2
Tissue enhanced
Detected in all
lens:
121.3
ELMO1
ENSSSCG00000016656
ENSG00000155849
Engulfment and cell motility 1
Low tissue specificity
Detected in all
ELMO2
ENSSSCG00000023306
ENSG00000062598
Engulfment and cell motility 2
Low tissue specificity
Detected in all
ELMO3
ENSSSCG00000002786
ENSG00000102890
Engulfment and cell motility 3
Tissue enhanced
Detected in many
male glands:
48.7
ELMOD2
ENSSSCG00000009055
ENSG00000179387
ELMO domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
23.6
pineal gland:
20.3
ELMOD3
ENSSSCG00000008238
ENSG00000115459
ELMO domain containing 3
Tissue enhanced
Detected in all
adipose tissue:
80.9
ELMSAN1
ENSSSCG00000002350
ENSG00000156030
ELM2 and Myb/SANT domain containing 1
Low tissue specificity
Detected in all
ELOA
ENSSSCG00000025440
ENSG00000011007
Elongin A
Low tissue specificity
Detected in all
ELOC
ENSSSCG00000006176
ENSG00000154582
Elongin C
Low tissue specificity
Detected in all
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