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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EFHC2
ENSSSCG00000021846
ENSG00000183690
EF-hand domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
14.0
fallopian tube:
14.2
pineal gland:
14.1
testis:
17.9
EFHD1
ENSSSCG00000016290
ENSG00000115468
EF-hand domain family member D1
Tissue enhanced
Detected in many
brain:
53.9
testis:
44.6
vagus nerve:
50.3
EFHD2
ENSSSCG00000003458
ENSG00000142634
EF-hand domain family member D2
Tissue enhanced
Detected in all
stomach:
162.8
EFL1
ENSSSCG00000001792
ENSG00000140598
Elongation factor like GTPase 1
Low tissue specificity
Detected in all
EFNA1
ENSSSCG00000006530
ENSG00000169242
Ephrin-A1 precursor
Low tissue specificity
Detected in all
EFNA2
ENSSSCG00000038701
ENSG00000099617
Ephrin A2
Tissue enriched
Detected in many
lymphoid tissue:
27.9
EFNA4
ENSSSCG00000036831
ENSG00000243364
Ephrin A4
Tissue enhanced
Detected in many
skin:
14.8
EFNA5
ENSSSCG00000036520
ENSG00000184349
Ephrin A5
Low tissue specificity
Detected in many
EFNB1
ENSSSCG00000032728
ENSG00000090776
Ephrin B1
Low tissue specificity
Detected in all
EFNB2
ENSSSCG00000009535
ENSG00000125266
Ephrin-B2
Low tissue specificity
Detected in all
EFR3A
ENSSSCG00000005955
ENSG00000132294
EFR3 homolog A
Low tissue specificity
Detected in all
EFS
ENSSSCG00000002026
ENSG00000100842
Embryonal Fyn-associated substrate
Low tissue specificity
Detected in many
EFTUD2
ENSSSCG00000017346
ENSG00000108883
Elongation factor Tu GTP binding domain containing 2
Tissue enhanced
Detected in all
cornea:
73.5
lens:
69.9
EGFL6
ENSSSCG00000012121
ENSG00000198759
EGF like domain multiple 6
Tissue enhanced
Detected in many
cornea:
16.4
dura mater:
21.7
pituitary gland:
25.4
upper respiratory system:
14.7
EGFL7
ENSSSCG00000005828
ENSG00000172889
EGF like domain multiple 7
Low tissue specificity
Detected in all
EGFL8
ENSSSCG00000001434
ENSG00000241404
Epidermal growth factor-like protein 8
Tissue enhanced
Detected in all
stomach:
44.4
vagus nerve:
78.8
EGFLAM
ENSSSCG00000016848
ENSG00000164318
EGF like, fibronectin type III and laminin G domains
Tissue enhanced
Detected in many
mesothelial tissue:
40.6
retina:
39.6
EGFR
ENSSSCG00000022126
ENSG00000146648
Epidermal growth factor receptor precursor
Tissue enhanced
Detected in many
male glands:
80.6
EGLN1
ENSSSCG00000010172
ENSG00000135766
Egl-9 family hypoxia inducible factor 1
Low tissue specificity
Detected in all
EGLN2
ENSSSCG00000002995
ENSG00000269858
Egl-9 family hypoxia inducible factor 2
Tissue enhanced
Detected in all
testis:
84.3
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
EGR1
ENSSSCG00000014336
ENSG00000120738
Early growth response 1
Tissue enhanced
Detected in many
synovial tissue:
149.2
EGR3
ENSSSCG00000009630
ENSG00000179388
Early growth response 3
Tissue enhanced
Detected in many
synovial tissue:
55.2
EGR4
ENSSSCG00000036364
ENSG00000135625
Early growth response protein 4
Tissue enhanced
Detected in many
brain:
16.1
ovary:
17.4
EHBP1
ENSSSCG00000008372
ENSG00000115504
EH domain binding protein 1
Low tissue specificity
Detected in all
EHBP1L1
ENSSSCG00000012988
ENSG00000173442
EH domain binding protein 1 like 1
Low tissue specificity
Detected in many
EHD1
ENSSSCG00000013017
ENSG00000110047
EH domain containing 1
Low tissue specificity
Detected in all
EHD2
ENSSSCG00000023371
ENSG00000024422
EH domain containing 2
Tissue enhanced
Detected in many
adipose tissue:
96.4
EHD3
ENSSSCG00000035987
ENSG00000013016
EH domain containing 3
Tissue enhanced
Detected in many
adrenal gland:
26.4
lens:
31.8
lymphoid tissue:
22.8
EHD4
ENSSSCG00000020666
ENSG00000103966
EH domain containing 4
Tissue enhanced
Detected in many
heart:
46.2
EHF
ENSSSCG00000013300
ENSG00000135373
ETS homologous factor
Tissue enhanced
Detected in many
male glands:
88.9
salivary gland:
88.8
upper respiratory system:
80.8
EHHADH
ENSSSCG00000040296
ENSG00000113790
Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase
Group enriched
Detected in all
kidney:
52.9
liver:
89.3
EHMT1
ENSSSCG00000038437
ENSG00000181090
Euchromatic histone lysine methyltransferase 1
Low tissue specificity
Detected in all
EHMT2
ENSSSCG00000001420
ENSG00000204371
Histone-lysine N-methyltransferase EHMT2
Low tissue specificity
Detected in all
EI24
ENSSSCG00000015213
ENSG00000149547
EI24, autophagy associated transmembrane protein
Low tissue specificity
Detected in all
EIF1
ENSSSCG00000017430
ENSG00000173812
Eukaryotic translation initiation factor 1
Low tissue specificity
Detected in all
EIF1AD
ENSSSCG00000027334
ENSG00000175376
Eukaryotic translation initiation factor 1A domain containing
Low tissue specificity
Detected in all
EIF1AX
ENSSSCG00000032223
ENSG00000173674
Eukaryotic translation initiation factor 1A, X-chromosomal
Low tissue specificity
Detected in all
EIF1B
ENSSSCG00000011270
ENSG00000114784
Eukaryotic translation initiation factor 1b
Tissue enhanced
Detected in all
brain:
64.6
lens:
86.7
EIF2A
ENSSSCG00000011710
ENSG00000144895
Eukaryotic translation initiation factor 2A
Low tissue specificity
Detected in all
EIF2AK1
ENSSSCG00000007592
ENSG00000086232
Eukaryotic translation initiation factor 2 alpha kinase 1
Low tissue specificity
Detected in all
EIF2AK2
ENSSSCG00000008496
ENSG00000055332
Interferon-induced, double-stranded RNA-activated protein kinase
Low tissue specificity
Detected in all
EIF2AK3
ENSSSCG00000008208
ENSG00000172071
Eukaryotic translation initiation factor 2 alpha kinase 3
Tissue enhanced
Detected in all
male glands:
53.2
EIF2AK4
ENSSSCG00000039061
ENSG00000128829
Eukaryotic translation initiation factor 2 alpha kinase 4
Low tissue specificity
Detected in all
EIF2B2
ENSSSCG00000002377
ENSG00000119718
Eukaryotic translation initiation factor 2B subunit beta
Low tissue specificity
Detected in all
EIF2B3
ENSSSCG00000029808
ENSG00000070785
Eukaryotic translation initiation factor 2B subunit gamma
Low tissue specificity
Detected in all
EIF2B4
ENSSSCG00000023140
ENSG00000115211
Eukaryotic translation initiation factor 2B subunit delta
Low tissue specificity
Detected in all
EIF2B5
ENSSSCG00000011783
ENSG00000145191
Eukaryotic translation initiation factor 2B subunit epsilon
Low tissue specificity
Detected in all
EIF2D
ENSSSCG00000015648
ENSG00000143486
Eukaryotic translation initiation factor 2D
Low tissue specificity
Detected in all
EIF2S1
ENSSSCG00000033295
ENSG00000134001
Eukaryotic translation initiation factor 2 subunit alpha
Tissue enhanced
Detected in all
lens:
42.8
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