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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RPP21
ENSSSCG00000021130
ENSG00000241370
Ribonuclease P protein subunit p21
Low tissue specificity
Detected in all
RPP25L
ENSSSCG00000010973
ENSG00000164967
Ribonuclease P/MRP subunit p25 like
Low tissue specificity
Detected in all
RPP30
ENSSSCG00000010460
ENSG00000148688
Ribonuclease P/MRP subunit p30
Low tissue specificity
Detected in all
RPP38
ENSSSCG00000027110
ENSG00000152464
Ribonuclease P protein subunit p38
Low tissue specificity
Detected in all
RPP40
ENSSSCG00000000998
ENSG00000124787
Ribonuclease P/MRP subunit p40
Low tissue specificity
Detected in all
RPRD1A
ENSSSCG00000027700
ENSG00000141425
Regulation of nuclear pre-mRNA domain containing 1A
Low tissue specificity
Detected in all
RPRD1B
ENSSSCG00000007342
ENSG00000101413
Regulation of nuclear pre-mRNA domain containing 1B
Low tissue specificity
Detected in all
RPRD2
ENSSSCG00000030291
ENSG00000163125
Regulation of nuclear pre-mRNA domain containing 2
Low tissue specificity
Detected in all
RPS11
ENSSSCG00000003165
ENSG00000142534
40S ribosomal protein S11
Low tissue specificity
Detected in all
RPS12
ENSSSCG00000004177
40S ribosomal protein S12
Low tissue specificity
Detected in all
RPS13
ENSSSCG00000013381
ENSG00000110700
40S ribosomal protein S13
Tissue enhanced
Detected in all
lens:
266.9
RPS15
ENSSSCG00000033169
ENSG00000115268
40S ribosomal protein S15
Low tissue specificity
Detected in all
RPS15A
ENSSSCG00000035768
ENSG00000134419
Ribosomal protein S15a
Low tissue specificity
Detected in all
RPS16
ENSSSCG00000020817
ENSG00000105193
40S ribosomal protein S16
Low tissue specificity
Detected in all
RPS17
ENSSSCG00000027358
ENSG00000182774
40S ribosomal protein S17
Tissue enhanced
Detected in all
male glands:
385.4
RPS18
ENSSSCG00000001502
40S ribosomal protein S18
Low tissue specificity
Detected in all
RPS19BP1
ENSSSCG00000000083
ENSG00000187051
Ribosomal protein S19 binding protein 1
Low tissue specificity
Detected in all
RPS20
ENSSSCG00000040470
40S ribosomal protein S20
Low tissue specificity
Detected in all
RPS21
ENSSSCG00000021825
ENSG00000171858
40S ribosomal protein S21
Tissue enhanced
Detected in all
lens:
89.9
RPS23
ENSSSCG00000014133
ENSG00000186468
40S ribosomal protein S23
Low tissue specificity
Detected in all
RPS26
ENSSSCG00000000374
40S ribosomal protein S26
Tissue enhanced
Detected in all
lens:
241.2
male glands:
277.8
RPS27A
ENSSSCG00000034617
ENSG00000143947
Ribosomal protein S27a
Tissue enhanced
Detected in all
male glands:
209.7
RPS27L
ENSSSCG00000023158
ENSG00000185088
Ribosomal protein S27 like
Low tissue specificity
Detected in all
RPS28
ENSSSCG00000013597
ENSG00000233927
40S ribosomal protein S28
Low tissue specificity
Detected in all
RPS29
ENSSSCG00000038507
ENSG00000213741
Ribosomal protein S29
Tissue enhanced
Detected in all
lens:
291.8
RPS3
ENSSSCG00000014855
ENSG00000149273
40S ribosomal protein S3
Low tissue specificity
Detected in all
RPS3A
ENSSSCG00000009019
ENSG00000145425
40S ribosomal protein S3a
Tissue enhanced
Detected in all
male glands:
308.4
RPS4X
ENSSSCG00000012405
ENSG00000198034
40S ribosomal protein S4, X isoform
Low tissue specificity
Detected in all
RPS5
ENSSSCG00000004002
ENSG00000083845
Ribosomal protein S5
Low tissue specificity
Detected in all
RPS6KA1
ENSSSCG00000003558
ENSG00000117676
Ribosomal protein S6 kinase alpha-1
Tissue enhanced
Detected in many
large intestine:
38.7
RPS6KA2
ENSSSCG00000004022
ENSG00000071242
Ribosomal protein S6 kinase A2
Tissue enhanced
Detected in many
brain:
32.2
lens:
49.4
RPS6KA3
ENSSSCG00000012163
ENSG00000177189
Ribosomal protein S6 kinase A3
Tissue enhanced
Detected in all
male glands:
66.0
RPS6KA4
ENSSSCG00000028806
ENSG00000162302
Ribosomal protein S6 kinase A4
Tissue enhanced
Detected in all
stomach:
41.7
RPS6KA5
ENSSSCG00000024377
ENSG00000100784
Ribosomal protein S6 kinase A5
Low tissue specificity
Detected in all
RPS6KA6
ENSSSCG00000012456
ENSG00000072133
Ribosomal protein S6 kinase A6
Tissue enhanced
Detected in many
brain:
9.1
fallopian tube:
7.9
pituitary gland:
9.1
RPS6KB1
ENSSSCG00000017670
ENSG00000108443
Ribosomal protein S6 kinase B1
Low tissue specificity
Detected in all
RPS6KB2
ENSSSCG00000012910
ENSG00000175634
Ribosomal protein S6 kinase B2
Low tissue specificity
Detected in all
RPS6KC1
ENSSSCG00000015586
ENSG00000136643
Ribosomal protein S6 kinase C1
Low tissue specificity
Detected in all
RPS9
ENSSSCG00000029785
ENSG00000170889
Ribosomal protein S9
Low tissue specificity
Detected in all
RPSA
ENSSSCG00000037236
40S ribosomal protein SA
Low tissue specificity
Detected in all
RPTOR
ENSSSCG00000017139
ENSG00000141564
Regulatory associated protein of MTOR complex 1
Low tissue specificity
Detected in all
RPUSD1
ENSSSCG00000008000
ENSG00000007376
RNA pseudouridylate synthase domain containing 1
Low tissue specificity
Detected in all
RPUSD2
ENSSSCG00000036700
ENSG00000166133
RNA pseudouridylate synthase domain containing 2
Low tissue specificity
Detected in all
RPUSD3
ENSSSCG00000011555
ENSG00000156990
RNA pseudouridylate synthase domain containing 3
Low tissue specificity
Detected in all
RPUSD4
ENSSSCG00000015233
ENSG00000165526
RNA pseudouridylate synthase domain-containing protein 4
Low tissue specificity
Detected in all
RRAGA
ENSSSCG00000005174
ENSG00000155876
Ras related GTP binding A
Low tissue specificity
Detected in all
RRAGB
ENSSSCG00000037228
ENSG00000083750
Ras related GTP binding B
Low tissue specificity
Detected in all
RRAGC
ENSSSCG00000003648
ENSG00000116954
C-Myc-binding protein
Low tissue specificity
Detected in all
RRAGD
ENSSSCG00000004318
ENSG00000025039
Ras-related GTP-binding protein D
Tissue enhanced
Detected in many
male glands:
34.4
RRAS
ENSSSCG00000003183
ENSG00000126458
RAS related
Tissue enhanced
Detected in all
smooth muscle:
113.4
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