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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ROCK1
ENSSSCG00000021893
ENSG00000067900
Rho associated coiled-coil containing protein kinase 1
Low tissue specificity
Detected in all
ROCK2
ENSSSCG00000008629
ENSG00000134318
Rho-associated protein kinase 2
Low tissue specificity
Detected in all
ROGDI
ENSSSCG00000007932
ENSG00000067836
Rogdi homolog
Tissue enhanced
Detected in all
stomach:
66.7
ROM1
ENSSSCG00000033054
ENSG00000149489
Retinal outer segment membrane protein 1
Group enriched
Detected in all
pineal gland:
16.6
retina:
57.3
ROMO1
ENSSSCG00000007308
ENSG00000125995
Reactive oxygen species modulator 1
Low tissue specificity
Detected in all
ROPN1L
ENSSSCG00000022306
ENSG00000145491
Rhophilin associated tail protein 1 like
Tissue enhanced
Detected in many
fallopian tube:
54.9
testis:
67.2
upper respiratory system:
36.0
ROR1
ENSSSCG00000003811
ENSG00000185483
Receptor tyrosine kinase like orphan receptor 1
Tissue enhanced
Detected in many
lens:
31.7
ROR2
ENSSSCG00000009593
ENSG00000169071
Receptor tyrosine kinase like orphan receptor 2
Tissue enhanced
Detected in many
cervix:
28.8
smooth muscle:
37.0
RORA
ENSSSCG00000004576
ENSG00000069667
RAR related orphan receptor A
Tissue enhanced
Detected in all
skin:
66.7
RORC
ENSSSCG00000026427
ENSG00000143365
RAR related orphan receptor C
Tissue enhanced
Detected in many
liver:
41.5
lymphoid tissue:
53.4
male glands:
45.5
RP2
ENSSSCG00000027701
ENSG00000102218
RP2, ARL3 GTPase activating protein
Tissue enriched
Detected in all
thyroid gland:
99.4
RP9
ENSSSCG00000038919
ENSG00000164610
RP9, pre-mRNA splicing factor
Low tissue specificity
Detected in all
RPA1
ENSSSCG00000017822
ENSG00000132383
Replication protein A1
Low tissue specificity
Detected in all
RPA2
ENSSSCG00000003583
ENSG00000117748
Replication protein A 32 kDa subunit
Low tissue specificity
Detected in all
RPAIN
ENSSSCG00000036311
ENSG00000129197
RPA interacting protein
Low tissue specificity
Detected in all
RPAP1
ENSSSCG00000004745
ENSG00000103932
RNA polymerase II associated protein 1
Low tissue specificity
Detected in all
RPAP2
ENSSSCG00000006903
ENSG00000122484
RNA polymerase II associated protein 2
Low tissue specificity
Detected in all
RPAP3
ENSSSCG00000021166
ENSG00000005175
RNA polymerase II associated protein 3
Low tissue specificity
Detected in all
RPF1
ENSSSCG00000022145
ENSG00000117133
Ribosome production factor 1 homolog
Low tissue specificity
Detected in all
RPF2
ENSSSCG00000004394
ENSG00000197498
Ribosome production factor 2 homolog
Low tissue specificity
Detected in all
RPGRIP1L
ENSSSCG00000031652
ENSG00000103494
RPGRIP1 like
Low tissue specificity
Detected in all
RPH3A
ENSSSCG00000009883
ENSG00000089169
Rabphilin 3A
Group enriched
Detected in some
brain:
52.3
retina:
16.8
RPH3AL
ENSSSCG00000036705
ENSG00000181031
Rabphilin 3A like (without C2 domains)
Low tissue specificity
Detected in all
RPIA
ENSSSCG00000008207
ENSG00000153574
Ribose-5-phosphate isomerase
Low tissue specificity
Detected in all
RPL10
ENSSSCG00000035997
60S ribosomal protein L10
Tissue enhanced
Detected in all
lens:
361.8
RPL10A
ENSSSCG00000001543
ENSG00000198755
Ribosomal protein L10a
Tissue enhanced
Detected in all
male glands:
248.5
RPL11
ENSSSCG00000024260
ENSG00000142676
60S ribosomal protein L11
Tissue enhanced
Detected in all
lens:
391.3
RPL13
ENSSSCG00000024974
ENSG00000167526
60S ribosomal protein L13
Low tissue specificity
Detected in all
RPL17-C18orf32
ENSSSCG00000035007
ENSG00000215472
60S ribosomal protein L17
Tissue enhanced
Detected in all
male glands:
245.9
RPL18
ENSSSCG00000025928
ENSG00000063177
Ribosomal protein L18
Low tissue specificity
Detected in all
RPL19
ENSSSCG00000017509
ENSG00000108298
Ribosomal protein L19
Low tissue specificity
Detected in all
RPL22
ENSSSCG00000040777
ENSG00000116251
60S ribosomal protein L22
Low tissue specificity
Detected in all
RPL23
ENSSSCG00000038880
ENSG00000125691
60S ribosomal protein L23
Low tissue specificity
Detected in all
RPL26L1
ENSSSCG00000016989
ENSG00000037241
60S ribosomal protein L26-like 1
Low tissue specificity
Detected in all
RPL27
ENSSSCG00000025507
ENSG00000131469
60S ribosomal protein L27
Low tissue specificity
Detected in all
RPL3
ENSSSCG00000040494
60S ribosomal protein L3
Low tissue specificity
Detected in all
RPL35
ENSSSCG00000034227
60S ribosomal protein L35
Low tissue specificity
Detected in all
RPL36AL
ENSSSCG00000005006
60S ribosomal protein L36a
Tissue enhanced
Detected in all
male glands:
111.2
RPL37
ENSSSCG00000033326
ENSG00000145592
60S ribosomal protein L37
Tissue enhanced
Detected in all
male glands:
183.0
RPL37A
ENSSSCG00000036716
ENSG00000197756
Ribosomal protein L37a
Tissue enhanced
Detected in all
male glands:
74.7
RPL5
ENSSSCG00000006899
60S ribosomal protein L5
Low tissue specificity
Detected in all
RPL6
ENSSSCG00000039130
60S ribosomal protein L6
Low tissue specificity
Detected in all
RPL7
ENSSSCG00000032111
60S ribosomal protein L7
Low tissue specificity
Detected in all
RPL7A
ENSSSCG00000035904
ENSG00000148303
Ribosomal protein L7a
Tissue enhanced
Detected in all
lens:
376.7
RPL7L1
ENSSSCG00000026472
ENSG00000146223
60S ribosomal protein L7-like 1
Low tissue specificity
Detected in all
RPL8
ENSSSCG00000029830
ENSG00000161016
Ribosomal protein L8
Low tissue specificity
Detected in all
RPLP0
ENSSSCG00000036014
60S acidic ribosomal protein P0
Tissue enhanced
Detected in all
lens:
310.2
RPLP2
ENSSSCG00000012842
60S acidic ribosomal protein P2
Low tissue specificity
Detected in all
RPN1
ENSSSCG00000011612
ENSG00000163902
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 precursor
Low tissue specificity
Detected in all
RPN2
ENSSSCG00000028227
ENSG00000118705
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 precursor
Tissue enhanced
Detected in all
ovary:
108.1
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