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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRDM15
ENSSSCG00000012084
ENSG00000141956
PR/SET domain 15
Low tissue specificity
Detected in all
PRDM16
ENSSSCG00000021490
ENSG00000142611
PR/SET domain 16
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
PRDM2
ENSSSCG00000020710
ENSG00000116731
PR/SET domain 2
Low tissue specificity
Detected in all
PRDM4
ENSSSCG00000000160
ENSG00000110851
PR/SET domain 4
Low tissue specificity
Detected in all
PRDM5
ENSSSCG00000009101
ENSG00000138738
PR/SET domain 5
Low tissue specificity
Detected in all
PRDX2
ENSSSCG00000013736
Peroxiredoxin-2
Low tissue specificity
Detected in all
PRDX3
ENSSSCG00000010682
ENSG00000165672
Thioredoxin-dependent peroxide reductase, mitochondrial
Tissue enhanced
Detected in all
ovary:
91.6
PRDX4
ENSSSCG00000012171
ENSG00000123131
Peroxiredoxin 4
Low tissue specificity
Detected in all
PRDX5
ENSSSCG00000013030
ENSG00000126432
Peroxiredoxin-5, mitochondrial
Tissue enhanced
Detected in all
male glands:
87.6
PRDX6
ENSSSCG00000022742
ENSG00000117592
Peroxiredoxin-6
Tissue enhanced
Detected in all
large intestine:
134.3
PREB
ENSSSCG00000008553
ENSG00000138073
Prolactin regulatory element binding
Low tissue specificity
Detected in all
PRELID1
ENSSSCG00000031182
ENSG00000169230
PRELI domain-containing protein 1, mitochondrial
Low tissue specificity
Detected in all
PRELID2
ENSSSCG00000014406
ENSG00000186314
PRELI domain containing 2
Low tissue specificity
Detected in all
PRELID3A
ENSSSCG00000036781
ENSG00000141391
PRELI domain containing 3A
Tissue enhanced
Detected in all
brain:
14.4
PRELP
ENSSSCG00000015271
ENSG00000188783
Proline and arginine rich end leucine rich repeat protein
Tissue enriched
Detected in many
cartilage:
236.7
PREP
ENSSSCG00000004368
ENSG00000085377
Prolyl endopeptidase
Low tissue specificity
Detected in all
PREPL
ENSSSCG00000008448
ENSG00000138078
Prolyl endopeptidase like
Tissue enhanced
Detected in all
brain:
49.8
pineal gland:
44.1
pituitary gland:
33.0
PREX1
ENSSSCG00000031118
ENSG00000124126
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1
Tissue enhanced
Detected in all
cartilage:
38.9
lymphoid tissue:
37.3
PREX2
ENSSSCG00000006199
ENSG00000046889
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
Low tissue specificity
Detected in many
PRF1
ENSSSCG00000010271
ENSG00000180644
Perforin 1
Tissue enhanced
Detected in many
lymphoid tissue:
21.5
PRICKLE1
ENSSSCG00000034491
ENSG00000139174
Prickle planar cell polarity protein 1
Tissue enhanced
Detected in all
lens:
43.2
PRICKLE2
ENSSSCG00000011495
ENSG00000163637
Prickle planar cell polarity protein 2
Tissue enhanced
Detected in many
brain:
33.8
PRICKLE3
ENSSSCG00000012293
ENSG00000012211
Prickle planar cell polarity protein 3
Low tissue specificity
Detected in many
PRIM1
ENSSSCG00000026055
ENSG00000198056
DNA primase small subunit
Low tissue specificity
Detected in all
PRIM2
ENSSSCG00000001493
ENSG00000146143
DNA primase large subunit
Tissue enhanced
Detected in all
kidney:
30.9
PRIMA1
ENSSSCG00000002464
ENSG00000175785
Proline rich membrane anchor 1
Tissue enhanced
Detected in many
brain:
34.8
mesothelial tissue:
28.9
PRIMPOL
ENSSSCG00000015786
ENSG00000164306
Primase and DNA directed polymerase
Low tissue specificity
Detected in all
PRKAA1
ENSSSCG00000024598
ENSG00000132356
5'-AMP-activated protein kinase catalytic subunit alpha-1
Low tissue specificity
Detected in all
PRKAA2
ENSSSCG00000036145
ENSG00000162409
5'-AMP-activated protein kinase catalytic subunit alpha-2
Tissue enhanced
Detected in many
heart:
38.4
skeletal muscle:
54.3
PRKAB1
ENSSSCG00000009840
ENSG00000111725
5'-AMP-activated protein kinase subunit beta-1
Low tissue specificity
Detected in all
PRKACA
ENSSSCG00000013771
ENSG00000072062
Protein kinase cAMP-activated catalytic subunit alpha
Low tissue specificity
Detected in all
PRKACB
ENSSSCG00000040920
ENSG00000142875
Protein kinase cAMP-activated catalytic subunit beta
Tissue enhanced
Detected in many
brain:
48.5
pineal gland:
34.0
PRKAG2
ENSSSCG00000016432
ENSG00000106617
Protein kinase AMP-activated non-catalytic subunit gamma 2
Low tissue specificity
Detected in all
PRKAG3
ENSSSCG00000016200
ENSG00000115592
5'-AMP-activated protein kinase subunit gamma-3
Tissue enhanced
Detected in all
salivary gland:
28.1
PRKAR1A
ENSSSCG00000017259
ENSG00000108946
CAMP-dependent protein kinase type I-alpha regulatory subunit
Low tissue specificity
Detected in all
PRKAR2A
ENSSSCG00000011363
ENSG00000114302
CAMP-dependent protein kinase type II-alpha regulatory subunit
Low tissue specificity
Detected in all
PRKCA
ENSSSCG00000017268
ENSG00000154229
Protein kinase C alpha
Tissue enhanced
Detected in all
brain:
40.2
vagus nerve:
44.0
PRKCD
ENSSSCG00000023503
ENSG00000163932
Protein kinase C delta
Tissue enhanced
Detected in all
stomach:
54.1
PRKCG
ENSSSCG00000003256
ENSG00000126583
Protein kinase C gamma
Tissue enriched
Detected in some
brain:
56.1
PRKCH
ENSSSCG00000005095
ENSG00000027075
Protein kinase C eta
Tissue enhanced
Detected in many
mesothelial tissue:
39.3
PRKCI
ENSSSCG00000011745
ENSG00000163558
Protein kinase C iota
Low tissue specificity
Detected in all
PRKCQ
ENSSSCG00000011131
ENSG00000065675
Protein kinase C theta
Tissue enhanced
Detected in all
choroid plexus:
30.7
lymphoid tissue:
36.3
skeletal muscle:
40.3
testis:
32.0
PRKCSH
ENSSSCG00000013627
ENSG00000130175
Glucosidase 2 subunit beta precursor
Low tissue specificity
Detected in all
PRKCZ
ENSSSCG00000030361
ENSG00000067606
Protein kinase C zeta type
Tissue enhanced
Detected in many
brain:
43.5
PRKD1
ENSSSCG00000001975
ENSG00000184304
Protein kinase D1
Low tissue specificity
Detected in all
PRKD2
ENSSSCG00000026152
ENSG00000105287
Protein kinase D2
Low tissue specificity
Detected in all
PRKD3
ENSSSCG00000008495
ENSG00000115825
Protein kinase D3
Low tissue specificity
Detected in all
PRKDC
ENSSSCG00000006274
ENSG00000253729
Protein kinase, DNA-activated, catalytic polypeptide
Low tissue specificity
Detected in all
PRKG1
ENSSSCG00000010429
ENSG00000185532
CGMP-dependent protein kinase 1
Tissue enhanced
Detected in all
smooth muscle:
48.6
PRKN
ENSSSCG00000004032
ENSG00000185345
E3 ubiquitin-protein ligase parkin
Low tissue specificity
Detected in all
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