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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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12
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PPP1R3D
ENSSSCG00000007530
ENSG00000132825
Protein phosphatase 1 regulatory subunit 3D
Low tissue specificity
Detected in all
PPP1R3E
ENSSSCG00000032977
ENSG00000235194
Protein phosphatase 1 regulatory subunit 3E
Low tissue specificity
Detected in all
PPP1R3F
ENSSSCG00000022584
ENSG00000049769
Protein phosphatase 1 regulatory subunit 3F
Tissue enhanced
Detected in many
brain:
12.0
PPP1R42
ENSSSCG00000006204
ENSG00000178125
Protein phosphatase 1 regulatory subunit 42
Group enriched
Detected in many
choroid plexus:
10.5
testis:
31.6
PPP1R7
ENSSSCG00000016376
ENSG00000115685
Protein phosphatase 1 regulatory subunit 7
Tissue enhanced
Detected in all
brain:
28.2
PPP1R8
ENSSSCG00000021634
ENSG00000117751
Nuclear inhibitor of protein phosphatase 1
Low tissue specificity
Detected in all
PPP1R9A
ENSSSCG00000015329
ENSG00000158528
Protein phosphatase 1 regulatory subunit 9A
Low tissue specificity
Detected in many
PPP1R9B
ENSSSCG00000017584
ENSG00000108819
Protein phosphatase 1 regulatory subunit 9B
Tissue enhanced
Detected in all
brain:
63.1
PPP2CA
ENSSSCG00000014298
ENSG00000113575
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
Low tissue specificity
Detected in all
PPP2CB
ENSSSCG00000015842
ENSG00000104695
Protein phosphatase 2 catalytic subunit beta
Tissue enhanced
Detected in all
lens:
60.8
PPP2R1A
ENSSSCG00000024413
ENSG00000105568
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
Low tissue specificity
Detected in all
PPP2R1B
ENSSSCG00000029538
ENSG00000137713
Protein phosphatase 2 scaffold subunit Abeta
Low tissue specificity
Detected in all
PPP2R2A
ENSSSCG00000009657
ENSG00000221914
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
Low tissue specificity
Detected in all
PPP2R2B
ENSSSCG00000028976
ENSG00000156475
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
Tissue enhanced
Detected in many
brain:
38.4
cornea:
32.3
lens:
62.1
retina:
33.4
PPP2R3A
ENSSSCG00000033185
ENSG00000073711
Protein phosphatase 2 regulatory subunit B''alpha
Low tissue specificity
Detected in all
PPP2R3B
ENSSSCG00000032029
ENSG00000167393
Protein phosphatase 2 regulatory subunit B''beta
Low tissue specificity
Detected in many
PPP2R3C
ENSSSCG00000031498
ENSG00000092020
Protein phosphatase 2 regulatory subunit B''gamma
Low tissue specificity
Detected in all
PPP2R5A
ENSSSCG00000015599
ENSG00000066027
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform
Low tissue specificity
Detected in all
PPP2R5B
ENSSSCG00000013016
ENSG00000068971
Protein phosphatase 2 regulatory subunit B'beta
Low tissue specificity
Detected in all
PPP2R5C
ENSSSCG00000002540
ENSG00000078304
Protein phosphatase 2 regulatory subunit B'gamma
Low tissue specificity
Detected in all
PPP2R5D
ENSSSCG00000001654
ENSG00000112640
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform
Low tissue specificity
Detected in all
PPP2R5E
ENSSSCG00000026382
ENSG00000154001
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform
Low tissue specificity
Detected in all
PPP3CB
ENSSSCG00000010301
ENSG00000107758
Protein phosphatase 3 catalytic subunit beta
Low tissue specificity
Detected in all
PPP3CC
ENSSSCG00000032622
ENSG00000120910
Protein phosphatase 3 catalytic subunit gamma
Low tissue specificity
Detected in all
PPP3R1
ENSSSCG00000036115
ENSG00000221823
Protein phosphatase 3 regulatory subunit B, alpha
Low tissue specificity
Detected in all
PPP4C
ENSSSCG00000036817
ENSG00000149923
Protein phosphatase 4 catalytic subunit
Low tissue specificity
Detected in all
PPP4R2
ENSSSCG00000037216
ENSG00000163605
Protein phosphatase 4 regulatory subunit 2
Low tissue specificity
Detected in all
PPP4R3A
ENSSSCG00000002441
ENSG00000100796
Protein phosphatase 4 regulatory subunit 3A
Low tissue specificity
Detected in all
PPP4R3B
ENSSSCG00000008398
ENSG00000275052
Serine/threonine-protein phosphatase 4 regulatory subunit 3B
Low tissue specificity
Detected in all
PPP5C
ENSSSCG00000003098
ENSG00000011485
Protein phosphatase 5 catalytic subunit
Low tissue specificity
Detected in all
PPP6C
ENSSSCG00000005600
ENSG00000119414
Serine/threonine-protein phosphatase 6 catalytic subunit
Low tissue specificity
Detected in all
PPP6R1
ENSSSCG00000003301
ENSG00000105063
Protein phosphatase 6 regulatory subunit 1
Low tissue specificity
Detected in all
PPP6R2
ENSSSCG00000000970
ENSG00000100239
Serine/threonine-protein phosphatase 6 regulatory subunit 2
Low tissue specificity
Detected in all
PPP6R3
ENSSSCG00000012884
ENSG00000110075
Protein phosphatase 6 regulatory subunit 3
Low tissue specificity
Detected in all
PPRC1
ENSSSCG00000010575
ENSG00000148840
Peroxisome proliferator-activated receptor gamma, coactivator-related 1
Low tissue specificity
Detected in all
PPT1
ENSSSCG00000036673
ENSG00000131238
Palmitoyl-protein thioesterase 1
Low tissue specificity
Detected in all
PPTC7
ENSSSCG00000009825
ENSG00000196850
PTC7 protein phosphatase homolog
Tissue enhanced
Detected in all
skeletal muscle:
45.9
PPWD1
ENSSSCG00000016945
ENSG00000113593
Peptidylprolyl isomerase domain and WD repeat-containing protein 1
Low tissue specificity
Detected in all
PQBP1
ENSSSCG00000025264
ENSG00000102103
Polyglutamine-binding protein 1
Low tissue specificity
Detected in all
PQLC1
ENSSSCG00000023171
ENSG00000122490
PQ loop repeat containing 1
Low tissue specificity
Detected in all
PQLC2
ENSSSCG00000003492
ENSG00000040487
Lysosomal amino acid transporter 1 homolog
Tissue enhanced
Detected in all
epididymis:
58.8
PQLC3
ENSSSCG00000008631
ENSG00000162976
PQ loop repeat containing 3
Low tissue specificity
Detected in all
PRADC1
ENSSSCG00000008304
ENSG00000135617
Protease associated domain containing 1
Low tissue specificity
Detected in all
PRAM1
ENSSSCG00000024810
ENSG00000133246
PML-RARA regulated adaptor molecule 1
Tissue enhanced
Detected in all
epididymis:
60.0
lymphoid tissue:
72.8
PRCC
ENSSSCG00000006467
ENSG00000143294
Papillary renal cell carcinoma (translocation-associated)
Low tissue specificity
Detected in all
PRCD
ENSSSCG00000028604
ENSG00000214140
Photoreceptor disc component
Tissue enriched
Detected in many
retina:
128.9
PRCP
ENSSSCG00000014899
ENSG00000137509
Prolylcarboxypeptidase
Low tissue specificity
Detected in all
PRDM1
ENSSSCG00000004369
ENSG00000057657
PR/SET domain 1
Low tissue specificity
Detected in many
PRDM10
ENSSSCG00000015243
ENSG00000170325
PR/SET domain 10
Tissue enhanced
Detected in all
liver:
44.9
PRDM11
ENSSSCG00000013276
ENSG00000019485
PR/SET domain 11
Low tissue specificity
Detected in all
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