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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15211 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CAMK1D
ENSSSCG00000011111
ENSG00000183049
Calcium/calmodulin-dependent protein kinase type 1D
Tissue enhanced
Detected in many
epididymis:
48.3
CAMK1G
ENSSSCG00000015619
ENSG00000008118
Calcium/calmodulin-dependent protein kinase type 1G
Tissue enhanced
Detected in many
brain:
22.6
cervix:
37.6
endometrium:
22.5
CAMK2D
ENSSSCG00000009123
ENSG00000145349
Calcium/calmodulin-dependent protein kinase type II subunit delta
Tissue enhanced
Detected in all
heart:
155.3
CAMK2G
ENSSSCG00000010311
ENSG00000148660
Calcium/calmodulin-dependent protein kinase type II subunit gamma
Low tissue specificity
Detected in all
CAMK4
ENSSSCG00000037019
ENSG00000152495
Calcium/calmodulin dependent protein kinase IV
Tissue enhanced
Detected in many
brain:
29.5
lymphoid tissue:
64.3
CAMKK1
ENSSSCG00000017873
ENSG00000004660
Calcium/calmodulin dependent protein kinase kinase 1
Tissue enhanced
Detected in many
lymphoid tissue:
38.2
CAMKK2
ENSSSCG00000009815
ENSG00000110931
Calcium/calmodulin dependent protein kinase kinase 2
Tissue enhanced
Detected in many
brain:
47.9
CAMKMT
ENSSSCG00000008447
ENSG00000143919
Calmodulin-lysine N-methyltransferase
Low tissue specificity
Detected in all
CAMLG
ENSSSCG00000038955
ENSG00000164615
Calcium signal-modulating cyclophilin ligand
Low tissue specificity
Detected in all
CAMSAP1
ENSSSCG00000005753
ENSG00000130559
Calmodulin regulated spectrin associated protein 1
Low tissue specificity
Detected in all
CAMSAP2
ENSSSCG00000027314
ENSG00000118200
Calmodulin regulated spectrin associated protein family member 2
Low tissue specificity
Detected in all
CAMTA1
ENSSSCG00000036772
ENSG00000171735
Calmodulin binding transcription activator 1
Tissue enhanced
Detected in many
brain:
25.4
pineal gland:
13.6
CAMTA2
ENSSSCG00000017902
ENSG00000108509
Calmodulin binding transcription activator 2
Low tissue specificity
Detected in all
CAND1
ENSSSCG00000028869
ENSG00000111530
Cullin associated and neddylation dissociated 1
Low tissue specificity
Detected in all
CAND2
ENSSSCG00000011582
ENSG00000144712
Cullin associated and neddylation dissociated 2 (putative)
Tissue enhanced
Detected in many
skeletal muscle:
40.6
CANT1
ENSSSCG00000038130
ENSG00000171302
Calcium activated nucleotidase 1
Low tissue specificity
Detected in all
CANX
ENSSSCG00000014020
ENSG00000127022
Calnexin precursor
Low tissue specificity
Detected in all
CAP1
ENSSSCG00000003672
ENSG00000131236
Cyclase associated actin cytoskeleton regulatory protein 1
Low tissue specificity
Detected in all
CAPG
ENSSSCG00000008239
ENSG00000042493
Capping actin protein, gelsolin like
Tissue enhanced
Detected in all
cornea:
75.4
lens:
57.7
CAPN1
ENSSSCG00000012999
ENSG00000014216
Calpain-1 catalytic subunit
Low tissue specificity
Detected in all
CAPN10
ENSSSCG00000037779
ENSG00000142330
Calpain-10
Low tissue specificity
Detected in all
CAPN15
ENSSSCG00000007993
ENSG00000103326
Calpain 15
Tissue enhanced
Detected in all
stomach:
57.6
CAPN2
ENSSSCG00000029411
ENSG00000162909
Calpain-2 catalytic subunit
Low tissue specificity
Detected in all
CAPN3
ENSSSCG00000004728
ENSG00000092529
Calpain 3
Tissue enriched
Detected in many
skeletal muscle:
135.8
CAPN5
ENSSSCG00000014875
ENSG00000149260
Calpain 5
Tissue enhanced
Detected in all
large intestine:
39.9
stomach:
89.9
CAPN7
ENSSSCG00000030697
ENSG00000131375
Calpain-7
Low tissue specificity
Detected in all
CAPNS1
ENSSSCG00000030149
ENSG00000126247
Calpain small subunit 1
Low tissue specificity
Detected in all
CAPRIN1
ENSSSCG00000013305
ENSG00000135387
Cell cycle associated protein 1
Low tissue specificity
Detected in all
CAPSL
ENSSSCG00000031959
ENSG00000152611
Calcyphosine like
Tissue enhanced
Detected in all
choroid plexus:
31.5
CAPZA1
ENSSSCG00000006775
ENSG00000116489
F-actin-capping protein subunit alpha-1
Low tissue specificity
Detected in all
CAPZA2
ENSSSCG00000028113
F-actin-capping protein subunit alpha-2
Low tissue specificity
Detected in all
CAPZB
ENSSSCG00000003493
ENSG00000077549
F-actin-capping protein subunit beta
Low tissue specificity
Detected in all
CARD10
ENSSSCG00000025260
ENSG00000100065
Caspase recruitment domain family member 10
Low tissue specificity
Detected in many
CARD11
ENSSSCG00000034390
ENSG00000198286
Caspase recruitment domain family member 11
Tissue enhanced
Detected in many
heart:
26.3
lymphoid tissue:
33.3
stomach:
42.8
CARD19
ENSSSCG00000008077
ENSG00000165233
Caspase recruitment domain-containing protein 19 isoform 2
Low tissue specificity
Detected in all
CARD6
ENSSSCG00000029367
ENSG00000132357
Caspase recruitment domain family member 6
Low tissue specificity
Detected in all
CARD9
ENSSSCG00000031715
ENSG00000187796
Caspase recruitment domain family member 9
Tissue enhanced
Detected in many
lymphoid tissue:
36.5
CARF
ENSSSCG00000016117
ENSG00000138380
Calcium responsive transcription factor
Low tissue specificity
Detected in all
CARHSP1
ENSSSCG00000026710
ENSG00000153048
Calcium regulated heat stable protein 1
Tissue enriched
Detected in all
lens:
154.8
CARM1
ENSSSCG00000013633
ENSG00000142453
Coactivator associated arginine methyltransferase 1
Low tissue specificity
Detected in all
CARMIL1
ENSSSCG00000001100
ENSG00000079691
Capping protein regulator and myosin 1 linker 1
Low tissue specificity
Detected in all
CARMIL2
ENSSSCG00000022722
ENSG00000159753
Capping protein regulator and myosin 1 linker 2
Tissue enhanced
Detected in many
lymphoid tissue:
40.8
CARMIL3
ENSSSCG00000002012
ENSG00000186648
Capping protein regulator and myosin 1 linker 3
Tissue enhanced
Detected in many
brain:
10.1
testis:
14.7
CARNMT1
ENSSSCG00000005271
ENSG00000156017
Carnosine N-methyltransferase 1
Low tissue specificity
Detected in all
CARNS1
ENSSSCG00000012911
ENSG00000172508
Carnosine synthase 1
Tissue enhanced
Detected in many
liver:
32.7
skeletal muscle:
46.1
vagus nerve:
25.5
CARS
ENSSSCG00000012857
ENSG00000110619
Cysteinyl-tRNA synthetase
Low tissue specificity
Detected in all
CARS2
ENSSSCG00000031757
ENSG00000134905
Cysteinyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
CASC1
ENSSSCG00000040550
ENSG00000118307
Cancer susceptibility 1
Tissue enhanced
Detected in all
adrenal gland:
34.4
CASC3
ENSSSCG00000017477
ENSG00000108349
Cancer susceptibility 3
Low tissue specificity
Detected in all
CASC4
ENSSSCG00000023996
ENSG00000166734
Cancer susceptibility 4
Low tissue specificity
Detected in all
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