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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15211 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C9orf72
ENSSSCG00000011010
ENSG00000147894
Chromosome 9 open reading frame 72
Low tissue specificity
Detected in all
C9orf78
ENSSSCG00000030426
ENSG00000136819
Chromosome 9 open reading frame 78
Low tissue specificity
Detected in all
C9orf85
ENSSSCG00000031105
ENSG00000155621
Chromosome 9 open reading frame 85
Low tissue specificity
Detected in all
CA13
ENSSSCG00000006143
ENSG00000185015
Carbonic anhydrase 13
Low tissue specificity
Detected in all
CA14
ENSSSCG00000027875
ENSG00000118298
Carbonic anhydrase 14
Tissue enhanced
Detected in all
brain:
35.7
skeletal muscle:
43.4
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CA3
ENSSSCG00000006141
ENSG00000164879
Carbonic anhydrase 3
Tissue enriched
Detected in many
skeletal muscle:
324.2
CA5B
ENSSSCG00000012141
ENSG00000169239
Carbonic anhydrase 5B
Tissue enhanced
Detected in all
adipose tissue:
42.3
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CAAP1
ENSSSCG00000005127
ENSG00000120159
Caspase activity and apoptosis inhibitor 1
Low tissue specificity
Detected in all
CAB39
ENSSSCG00000016266
ENSG00000135932
Calcium binding protein 39
Tissue enhanced
Detected in all
lens:
81.7
CAB39L
ENSSSCG00000009397
ENSG00000102547
Calcium binding protein 39 like
Tissue enriched
Detected in all
choroid plexus:
113.8
CABCOCO1
ENSSSCG00000033268
ENSG00000183346
Ciliary associated calcium binding coiled-coil 1
Tissue enhanced
Detected in many
choroid plexus:
14.7
fallopian tube:
11.8
CABIN1
ENSSSCG00000010062
ENSG00000099991
Calcineurin binding protein 1
Low tissue specificity
Detected in all
CABLES1
ENSSSCG00000003705
ENSG00000134508
Cdk5 and Abl enzyme substrate 1
Low tissue specificity
Detected in many
CABLES2
ENSSSCG00000007540
ENSG00000149679
Cdk5 and Abl enzyme substrate 2
Tissue enhanced
Detected in all
testis:
34.1
CABP2
ENSSSCG00000020764
ENSG00000167791
Calcium binding protein 2
Group enriched
Detected in many
pineal gland:
14.4
retina:
26.1
CACFD1
ENSSSCG00000040709
ENSG00000160325
Calcium channel flower domain containing 1
Tissue enhanced
Detected in all
stomach:
32.1
CACHD1
ENSSSCG00000004829
ENSG00000158966
Cache domain containing 1
Low tissue specificity
Detected in many
CACNA1C
ENSSSCG00000027725
ENSG00000151067
Calcium voltage-gated channel subunit alpha1 C
Tissue enhanced
Detected in many
heart:
35.8
smooth muscle:
38.1
CACNA1D
ENSSSCG00000011455
ENSG00000157388
Calcium voltage-gated channel subunit alpha1 D
Tissue enhanced
Detected in many
adrenal gland:
52.2
male glands:
30.6
CACNA1E
ENSSSCG00000015543
ENSG00000198216
Calcium voltage-gated channel subunit alpha1 E
Tissue enhanced
Detected in many
brain:
30.0
CACNA2D1
ENSSSCG00000015402
ENSG00000153956
Voltage-dependent calcium channel subunit alpha-2/delta-1 preproprotein
Tissue enhanced
Detected in many
skeletal muscle:
68.7
CACNB1
ENSSSCG00000017510
ENSG00000067191
Calcium voltage-gated channel auxiliary subunit beta 1
Tissue enhanced
Detected in all
skeletal muscle:
66.7
CACNB2
ENSSSCG00000011040
ENSG00000165995
Calcium voltage-gated channel auxiliary subunit beta 2
Low tissue specificity
Detected in all
CACNB3
ENSSSCG00000032967
ENSG00000167535
Calcium voltage-gated channel auxiliary subunit beta 3
Tissue enriched
Detected in many
brain:
23.0
CACNG3
ENSSSCG00000036255
ENSG00000006116
Calcium voltage-gated channel auxiliary subunit gamma 3
Tissue enhanced
Detected in all
brain:
26.4
CACTIN
ENSSSCG00000032085
ENSG00000105298
Cactin, spliceosome C complex subunit
Low tissue specificity
Detected in all
CACUL1
ENSSSCG00000038222
ENSG00000151893
CDK2 associated cullin domain 1
Low tissue specificity
Detected in all
CACYBP
ENSSSCG00000015504
ENSG00000116161
Calcyclin binding protein
Low tissue specificity
Detected in all
CAD
ENSSSCG00000028978
ENSG00000084774
Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Low tissue specificity
Detected in all
CADM1
ENSSSCG00000031831
ENSG00000182985
Cell adhesion molecule 1
Tissue enhanced
Detected in all
lens:
122.4
CADM2
ENSSSCG00000011999
ENSG00000175161
Cell adhesion molecule 2
Tissue enhanced
Detected in some
brain:
51.0
pineal gland:
22.4
retina:
25.0
CADM4
ENSSSCG00000003061
ENSG00000105767
Cell adhesion molecule 4
Group enriched
Detected in all
brain:
54.5
vagus nerve:
53.7
CADPS2
ENSSSCG00000016611
ENSG00000081803
Calcium dependent secretion activator 2
Tissue enhanced
Detected in many
brain:
78.6
CAGE1
ENSSSCG00000038886
ENSG00000164304
Cancer antigen 1
Tissue enhanced
Detected in all
testis:
33.6
CALCOCO1
ENSSSCG00000028481
ENSG00000012822
Calcium binding and coiled-coil domain 1
Low tissue specificity
Detected in all
CALCOCO2
ENSSSCG00000017543
ENSG00000136436
Calcium binding and coiled-coil domain 2
Low tissue specificity
Detected in all
CALCRL
ENSSSCG00000016031
ENSG00000064989
Calcitonin gene-related peptide type 1 receptor precursor
Tissue enhanced
Detected in many
lung:
51.7
CALD1
ENSSSCG00000016535
ENSG00000122786
Caldesmon 1
Tissue enhanced
Detected in all
smooth muscle:
183.5
CALHM2
ENSSSCG00000010600
ENSG00000138172
Calcium homeostasis modulator family member 2
Low tissue specificity
Detected in many
CALHM5
ENSSSCG00000031898
ENSG00000178033
Calcium homeostasis modulator family member 5
Low tissue specificity
Detected in all
CALHM6
ENSSSCG00000036064
ENSG00000188820
Protein FAM26F
Low tissue specificity
Detected in all
CALM1
ENSSSCG00000025768
Calmodulin
Tissue enhanced
Detected in all
brain:
160.5
CALM3
ENSSSCG00000022545
Calmodulin
Tissue enhanced
Detected in all
brain:
130.0
CALML4
ENSSSCG00000026517
ENSG00000129007
Calmodulin-like 4
Tissue enhanced
Detected in many
choroid plexus:
49.8
CALR
ENSSSCG00000013746
ENSG00000179218
Calreticulin
Low tissue specificity
Detected in all
CALU
ENSSSCG00000016581
ENSG00000128595
Calumenin
Low tissue specificity
Detected in all
CALY
ENSSSCG00000034701
ENSG00000130643
Calcyon neuron specific vesicular protein
Group enriched
Detected in all
brain:
56.8
pituitary gland:
26.8
CAMK1
ENSSSCG00000011550
ENSG00000134072
Calcium/calmodulin-dependent protein kinase type 1
Low tissue specificity
Detected in all
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